PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g53680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 421aa    MW: 47227.9 Da    PI: 7.2584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g53680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
       CA00g53680 14 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.24.3e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
       CA00g53680  67 RGTFSQDEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.969965IPR017930Myb domain
SuperFamilySSF466895.62E-2912108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001675.12E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.62166116IPR017930Myb domain
PfamPF002494.0E-1367109IPR001005SANT/Myb domain
CDDcd001671.53E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVESEEKASA NSNNKNNDKV SESSNNEFNF VEAHENGFST EKGINNMERY  180
PLIDHQANNI APPTHEFFTA NCKSPDLSSY LSFHNYSPNT NILFNTKNSS SDNMVSDHHQ  240
FNCSTLPNAT FSTMSSNSIL STSPLARTFN INKFQNWEAC TISSNGSNNS NGSSNSIELQ  300
SNCSFFDNSN AAAAAFTWGS ASAAAAADGS GKQEREEIKW SEYMQTPFSL GVNNNTIQNH  360
HHEISPHHQD LYDGETKSET QFMTHGTWLQ NQTPQTSLQT ADLYSNNNFQ RLPAVFGQFS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-141HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538869.10.0PREDICTED: myb-related protein 330
TrEMBLA0A2G2XYF00.0A0A2G2XYF0_CAPAN; Transcription factor MYB32
STRINGSolyc01g102340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-85myb domain protein 61