PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA00g49930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 22266.3 Da PI: 9.8972 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 140 | 188 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +ykGVr+++ +g+Wv+eIr p++ r+r +lg+f++aeeAa a++ + +l+ CA00g49930 140 RYKGVRQHH-WGKWVVEIRLPCK---RTRLWLGTFDSAEEAAIAYDVEAFRLK 188 8*******9.**********954...5*******************9999886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.63E-26 | 139 | 187 | No hit | No description |
PROSITE profile | PS51032 | 18.966 | 140 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 140 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-20 | 140 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 140 | 189 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-23 | 140 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MEYVESIGKV QSTMSRDRPL KKLKLSPSSK HVNLVAPFFN PSYDPKQSNK SNGDKVGPER 60 IREPGYELGF RFPFALDDPP STSNCHLNWQ SLSQNQTMIS FAPQNYLNLD YDPHHHATLT 120 TSMKTMVNVY STYSSPAPKR YKGVRQHHWG KWVVEIRLPC KRTRLWLGTF DSAEEAAIAY 180 DVEAFRLKRN KCAA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-14 | 139 | 191 | 1 | 54 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-13 | 139 | 192 | 4 | 58 | ATERF1 |
3gcc_A | 1e-13 | 139 | 192 | 4 | 58 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540768.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF053-like | ||||
TrEMBL | A0A1U8E0G4 | 1e-134 | A0A1U8E0G4_CAPAN; ethylene-responsive transcription factor ERF053-like | ||||
STRING | PGSC0003DMT400039576 | 8e-71 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-23 | ERF family protein |