PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g47490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 697aa    MW: 75716.2 Da    PI: 6.9651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g47490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06262282526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f + G C   d+C +aHg
  CA00g47490 262 PCPEFKK-GACAKSDSCEYAHG 282
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.29E-1529151IPR020683Ankyrin repeat-containing domain
PfamPF127969.5E-1066137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-1668185IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.80470145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001770100IPR002110Ankyrin repeat
CDDcd002046.28E-1572168No hitNo description
SMARTSM002480.0011105137IPR002110Ankyrin repeat
PROSITE profilePS5008811.701105140IPR002110Ankyrin repeat
PROSITE profilePS5010311.732257284IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-4257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15292316IPR000571Zinc finger, CCCH-type
SMARTSM0035625292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MCTGTRSKVC PSDLNMDKKD GVSRNCSKLL ELSASDDLAG FICEVEKGCA VDEFSFWYGR  60
RFGSKKMGFE ERTPLMIASM YGSTEILKYI LGTGKVDVNR ACGSDGATAL HCAAAGGLES  120
SIEVFKILID ASADVNVCDS SGNRPCDVIA SFPKSLRNSK RKSLELLLNG SLAELAEQEE  180
EEGKEAIQMT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKSDSCEYA HGVFESWLHP AQYRTRLCKD  300
ETGCSRKVCF FAHKPEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMLLPTS  360
STPPMSPAVT CSSPMGGNLW QSKVNITPPA LQLPGSRLKT SLNARDLDLD MDMLGLESIR  420
TQQQLRQQLI DEMAGLSSPS CWNKDNRMGD LKPTNLDDVF GSMDSQLLSQ LQGLSPRVAS  480
TTSSQLYSPS VSHLQGLSPK VSGNGGSQMQ SPTGLQMRQN MNQFQSSYSN IPQSSSPLRK  540
QPSAYGFDSA AAVAQAVMNS RSAAFAKRSQ SFIDRSGMSH RAVPNGVANS PPLMSSDWGS  600
PDGKLEWGFN SDDTNKLKRS QSFGFRGGNG APARSSTITP SQVNEPDVSW VHSLVKDVSS  660
TGTGLYSSEQ KHGGGVRESI PPWLEQMYID QERIVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573401.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A1U8GQ710.0A0A1U8GQ71_CAPAN; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A2G2ZJE70.0A0A2G2ZJE7_CAPAN; zinc finger CCCH domain-containing protein 29
TrEMBLA0A2G3AUP00.0A0A2G3AUP0_CAPCH; Zinc finger CCCH domain-containing protein 47
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein