PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g46910
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 192aa    MW: 21504.2 Da    PI: 5.1401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g46910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-181765254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++
  CA00g46910 17 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALSIK 65
                69****998.**********843...6**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-301676No hitNo description
PfamPF008475.0E-131665IPR001471AP2/ERF domain
PROSITE profilePS5103222.6031774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-291775IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-201775IPR016177DNA-binding domain
SMARTSM003806.7E-321780IPR001471AP2/ERF domain
PRINTSPR003673.8E-101829IPR001471AP2/ERF domain
PRINTSPR003673.8E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MTKRIRESAN TGNKHPIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTP EMAARAHDVA  60
ALSIKKDSSI LNFPHLIDSL PRPISLSPRD VQDAAAKAAA MEELNSASSS ISSSSVKSIE  120
KITSASDELC EIIELPSLEG SFDLDESKTE LKLSDTVDGW LYPPWWASDK DFDGYFLAET  180
DLEFKFNEFG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-191075773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577023.11e-137PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G2ZBL21e-136A0A2G2ZBL2_CAPAN; Dehydration-responsive element-binding protein 3
STRINGSolyc06g066540.1.15e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]