PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g46270

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 291aa MW: 33375.6 Da PI: 6.2403

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g46270	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.1	8.8e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ +++ CA00g46270 10 LPPGFRFYPSDEELVCHYLFKKITNEEVLK-GTLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPkTRT 107 79**********************9655.78***********87788899**********************************85566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy +rap+g kt W+mhe+rle CA00g46270 108 IVGMRKTLVFYMNRAPNGIKTGWIMHEFRLE 138 7*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.442	10	156	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KITNEEVLKG TLVEIDLHTC EPWQLPEVAK 60 LNSSEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VDPKTRTIVG MRKTLVFYMN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKTKAE NNSNNNNNNV LSPQNMYEVG 180 VNSPHNMDQS HALPYVGPRP MAATAFSQRQ VNNQSQKLFD LLEPNHNPSS YLQLMSQEMK 240 APPSNDQMVE DDEYGFLLDM NFENPNIQDG GVHSSIGDMK FDDENSLVFI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-48	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-48	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-48	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-48	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_D	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_D	1e-47	9	156	19	168	NAC domain-containing protein 19
4dul_A	9e-48	9	156	16	165	NAC domain-containing protein 19
4dul_B	9e-48	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-97	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-97	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565477.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
TrEMBL	A0A2G2ZXH6	0.0	A0A2G2ZXH6_CAPAN; Protein CUP-SHAPED COTYLEDON 3
STRING	XP_009607926.1	1e-172	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	8e-93	NAC domain containing protein 74