PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g45190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92363.9 Da    PI: 6.214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g45190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-191876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CA00g45190 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                5678*****************************************************97 PP
2START173.31.5e-541633712205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+v s+g  g+++l +++l
  CA00g45190 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRTVDVLNVMSTGtgGTIELLYMQL 260
                 7899******************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+  Ry+  +++g++v++++S++++q+ p+    + +vRa  lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++   +
  CA00g45190 261 YAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQTFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLSQ 359
                 ***************************************99888899**************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 +t++a+l+++++
  CA00g45190 360 RTTMAALRHLRQ 371
                 *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6941377IPR001356Homeobox domain
SMARTSM003896.8E-161581IPR001356Homeobox domain
SuperFamilySSF466897.27E-171779IPR009057Homeodomain-like
CDDcd000861.26E-161878No hitNo description
PfamPF000461.6E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182076IPR009057Homeodomain-like
CDDcd146862.38E-670109No hitNo description
PROSITE profilePS5084825.559153381IPR002913START domain
CDDcd088753.47E-79157372No hitNo description
SMARTSM002349.1E-39162372IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-22163368IPR023393START-like domain
SuperFamilySSF559619.61E-37163373No hitNo description
PfamPF018527.6E-52163371IPR002913START domain
PfamPF086702.6E-49698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MMAVTSSCKD KLGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQTAALPAT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRTVD  240
VLNVMSTGTG GTIELLYMQL YAPTTLAPAR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP  300
SMPPVQTFVR ADILPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLSQR  360
TTMAALRHLR QISQEISHPT VTGWGRRPAA LRALGQRLSK GFNEAVNGFT DEGWSMLESD  420
GIDDVTILVN SSPSKLMGAN LSYANGFPSM SSAVLCAKAS MLLQNVPPSI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQIILPLAH TIEHEEASDF FLIISSISRT  540
PHDMIMPGDI FLLQLCNGVD DNAVGTCAEL MFAPIDASFA DDAPLLPSGF RIIPLDSKSD  600
ASSPNRTLDL ASTLEVGPAG SRPTGDHSKS SGSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YVRSIISSVQ RVALALSPSR IGSLPGLRSP PGTPEAHTLA RWICQSYRFF LGVELLKSVS  720
GGSESILKEI WDHLDALMCC SLKALPVFTF ANEAGLDMLE TTLVALQDIT LEKIFDDNGR  780
KALFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDAHC ICFMFINWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537761.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2G2YWT40.0A0A2G2YWT4_CAPAN; Homeobox-leucine zipper protein HOX32
STRINGPGSC0003DMT4000749340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]