PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g45170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 299aa    MW: 33364.8 Da    PI: 7.1229
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g45170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.4e-392686262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +++ +kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s
  CA00g45170 26 EQQPQKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRPS 86
                57899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-282479IPR003851Zinc finger, Dof-type
PfamPF027013.4E-332884IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2363084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
EMSSQTLESM LVCTKPEQEK KPRPAEQQPQ KCPRCDSANT KFCYYNNYSL SQPRYFCKSC  60
RRYWTKGGTL RNVPVGGGCR KNKRPSSSSK RSQDNSPNSN NPISPLSIPT ISSYDHSSTD  120
LSLAFARLQK QASGHLGIDQ EHDDDDNNNN NMSMLYNPDN TSTTVPSSFL DALRGGSFLE  180
NAPNGFHHKM YYGNYGGMLG ANSEEMGMNY DQEMSIGTTS ASTIMTTTVK QEMCGIARSS  240
EGDQNNNSKV LWGFPWQQMN EDHLNKMNMS DFESTNRQNW SAFGVSSNWH GLINSPLM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493027e-78AC149302.1 Solanum demissum chromosome 11 clone PGEC400L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548394.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A1U8EWX10.0A0A1U8EWX1_CAPAN; Dof zinc finger protein DOF5.3
TrEMBLA0A2G2YGL20.0A0A2G2YGL2_CAPAN; dof zinc finger protein DOF2.1-like
STRINGPGSC0003DMT4000652711e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.14e-33TARGET OF MONOPTEROS 6