PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA00g41130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 9513.79 Da PI: 9.4527 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5.1e-13 | 2 | 51 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49 ++ien++ r vtfskR+ g+ KKA+ L d++v +i +s++gk y + CA00g41130 2 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 51 57************************9852679*************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.675 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-16 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-7 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-18 | 3 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 87 aa Download sequence Send to blast |
MEKIENETTR LVTFSKRKSG LYKKASKLVE KYDDVDVGII SYSPNGKPYS FFHPTFDSVV 60 GHFVSPDTQP SVDSGIVAAS ARIKVT* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541048.1 | 1e-53 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G2YPT1 | 2e-55 | A0A2G2YPT1_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400093647 | 8e-28 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-16 | AGAMOUS-like 29 |