PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g32460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 219aa MW: 24904.2 Da PI: 6.9918 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71.6 | 1.4e-22 | 170 | 217 | 2 | 49 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr CA00g32460 170 CQAEGCNADLTHAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRL 217 **********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-24 | 164 | 216 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.256 | 167 | 218 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-21 | 168 | 217 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-16 | 170 | 217 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLDYEWENQS TFIFPNDQTN QENEQNNNQF LDPHANFSPM TNYQHQQQQQ QQLQVQNSQF 60 PQYQVNPNNN QFNSLYDPRA YGVTYTNNTH ETSLLSLQPT GSSTGFMLMP KTEPQFGGGI 120 HDFSSTTTTR IGLNLGGRTY FASSSDDDFV NRLYRRTRTV EAGSLNTPKC QAEGCNADLT 180 HAKHYHRRHK VCEFHSKAAT VVAAGLTQRF CQQCSRLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 1e-17 | 170 | 217 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544498.1 | 1e-137 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_016544504.1 | 1e-137 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 3e-55 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2G3AME0 | 1e-161 | A0A2G3AME0_CAPAN; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2G3DJ70 | 1e-161 | A0A2G3DJ70_CAPCH; Squamosa promoter-binding-like protein 10 | ||||
STRING | Solyc01g090730.2.1 | 1e-110 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4846 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-51 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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