PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g18370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 521aa    MW: 57725.5 Da    PI: 6.9814
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g18370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093183502254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LAk++gL+ +qV++WF N R +
  CA00g18370 318 HPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 350
                 89*****************************88 PP
2BELL101.18.6e-33187255472
        BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +  kkk++L+s+l+eV+++Y qy+eqlq+v++sFe vag+g+a+p++++A k++S+hF+cLkdai++q+
  CA00g18370 187 QFGKKKTRLISMLDEVYQKYTQYNEQLQIVVASFESVAGIGNAAPFANIAIKTMSKHFKCLKDAITDQL 255
                 5679**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-39134253IPR006563POX domain
PfamPF075266.0E-33139252IPR006563POX domain
PROSITE profilePS5007111.953291354IPR001356Homeobox domain
CDDcd000863.24E-12294355No hitNo description
SMARTSM003898.6E-10294358IPR001356Homeobox domain
SuperFamilySSF466894.71E-17296360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27297358IPR009057Homeodomain-like
PfamPF059201.2E-18311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VLLDDNNSNS SSLQLQNCQV PLYDPSIVLP SDLSIFQEIN  60
VNPFLYTPQI PRFLDQSVTI AHNNNSNSNT NGQGNLSLSL SSLHHASSST ANTNDLSSKS  120
ITTTTNCVPL GPFTGYSLIL KRSKFLKPAQ ILLEELCDVG KEFYVVDDDD STLVMHPPQA  180
CSNGDEQFGK KKTRLISMLD EVYQKYTQYN EQLQIVVASF ESVAGIGNAA PFANIAIKTM  240
SKHFKCLKDA ITDQLQFTTT SKSSSHHHGQ INCERVGISG KGMYCQKQET QPVWRPQRGL  300
PERAVTVLRA WLFDHFLHPY PTDTDKVMLA KQTGLSRNQV SNWFINARVR LWKPMVEEIH  360
MLETREADDK SSQREGQNNN NNHNNNPNEH FPMNNSHACE SSTPSISTPR LLDVPSKRTR  420
NDLANIPNNI GGIADSINLS YGNMSTGVGG GVSLTLGLHQ NSGNIGLSEP FPINAARRFG  480
IESNTNSTGR FMFGAFDEQN GQFGRNNTMV GGQFLHDFAG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15300358563Homeobox protein Meis2
3k2a_B2e-15300358563Homeobox protein Meis2
4xrs_A2e-15300357158Homeobox protein Meis1
4xrs_B2e-15300357158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554690.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-103BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1U8FG170.0A0A1U8FG17_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YRE90.0A0A2G2YRE9_CAPAN; BEL1-like homeodomain protein 9
STRINGPGSC0003DMT4000623530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-90TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]