PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g03050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33386 Da PI: 8.3314 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.2e-51 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp+GfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + CA00g03050 8 LPAGFRFHPTDEELVTHYLCRKCASQPIAV-PIIAEIDLYKYNPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGNGYWKATGADKAIGR--PKP 103 799*************************99.88***************65556799************************************98..789 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy g+apkgekt+W+mheyrl CA00g03050 104 MGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-62 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.441 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGAVELRLPA GFRFHPTDEE LVTHYLCRKC ASQPIAVPII AEIDLYKYNP WDLPDLALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGNGYWK ATGADKAIGR PKPMGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLAHVDRSAR NKNNSLRLDD WVLCRIYNKK STIEKSQLNS RKMNVAMSPV 180 DIKPKIMAFP VSTRPSVTSQ QVNNDFIYFD SSDSLPKLHT DSRCSEHVLS PEFTCEREVQ 240 SEPKVSEWEK NALDFPFNYS DDATTTMGEL ESCYEMSPLQ DIFMYLQKPF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-81 | 4 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC231666 | 2e-99 | AC231666.1 Solanum tuberosum chromosome 11 clone RH052D21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016569664.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-133 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2G2ZP63 | 0.0 | A0A2G2ZP63_CAPAN; NAC domain-containing protein 48 | ||||
STRING | PGSC0003DMT400023917 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-136 | NAC family protein |