PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g00420
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 333aa    MW: 37963.1 Da    PI: 5.6331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g00420genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
       CA00g00420 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.92.6e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
       CA00g00420  67 RGMFSQDEEDRILGLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNS 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-24864IPR009057Homeodomain-like
PROSITE profilePS5129416.34961IPR017930Myb domain
SuperFamilySSF466899.17E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-91363IPR001005SANT/Myb domain
PfamPF002492.7E-131461IPR001005SANT/Myb domain
CDDcd001671.75E-81761No hitNo description
PROSITE profilePS5129423.17962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1166114IPR001005SANT/Myb domain
PfamPF002497.1E-1367110IPR001005SANT/Myb domain
CDDcd001672.28E-870112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRHSCGVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQDEEDRILG LHQVLGNRWA QIAAQLPGRT DNEIKNYWNS SLKKKLMKQG  120
IDPNTHKPLR ENQVIKDEEN CTNKTSMFEV PFLNEMDQPF TQLASSKDQY VSKQVFDLLF  180
AHEFQSNENN SQTLAQYHDD HHQSEYEENP NYVFCSASSV TKLEHGQMTD TDFASSSTSR  240
MSSSNSSNMC SNQNTAGILT ENSEALSWDV ENKMESLFQY PYIGIKNEEL RSSPSQEREL  300
YGHSSGDFMS NYPLSSLTEE LSGANLDVFK QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-118HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-118HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563683.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U8G4Q50.0A0A1U8G4Q5_CAPAN; Transcription factor MYB32
TrEMBLA0A2G3A1C20.0A0A2G3A1C2_CAPAN; transcription repressor MYB6-like
STRINGXP_009772158.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-76myb domain protein 55