PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_041240_fsje.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12665.6 Da PI: 10.7324 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.9e-07 | 25 | 66 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ +E + + + +++++ + +Ia ++ +++ +c+ ++++ Bv_041240_fsje.t1 25 PWSDQEKAVFRKKFSKFPKN-FVKIATFLP-NKSVGDCVAYYYS 66 8*****************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.83E-15 | 9 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.392 | 21 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-5 | 22 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-4 | 25 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MSWRSRNGLV EDPRAQDQYR KLINPWSDQE KAVFRKKFSK FPKNFVKIAT FLPNKSVGDC 60 VAYYYSSKTF VNYKALVKKY RQSLLSRKGI DITAQGHVEG IRSSRIDAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1xc5_A | 1e-18 | 5 | 74 | 2 | 71 | Nuclear receptor corepressor 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0J7YMU7 | 5e-75 | A0A0J7YMU7_BETVU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 9e-14 | MYB family protein |