PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_024660_ygrk.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C3H | ||||||||
Protein Properties | Length: 134aa MW: 14674.6 Da PI: 9.905 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 2e-11 | 54 | 79 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++Cr+++++G C+y +C+FaHg Bv_024660_ygrk.t1 54 FKTAICRTYSQFGSCPYEHKCRFAHG 79 79***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-16 | 48 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-10 | 50 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAHTVPTSIR SISTQQIPTF ASDLKSVQIT LSPAATDHSD ENAQKKSVCN PQLFKTAICR 60 TYSQFGSCPY EHKCRFAHGL SDLRPVPRFK SMSSAGPTSA PTTSQIFNAF QKSGDDAKIQ 120 RSHSTSPVLY PIKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0J8AZB6 | 1e-93 | A0A0J8AZB6_BETVU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 1e-09 | C3H family protein |