PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_017190_rxhh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22052.9 Da PI: 4.8859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 39 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+ +++ g+Wv+eIr+p++ ++r++lg++ tae+Aa+a++aa+++l+g Bv_017190_rxhh.t1 39 LYRGI--RPRGGKWVSEIREPKK---TTRIWLGTWATAEMAAAAYDAAALALKG 87 69***..699**********854...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-17 | 39 | 96 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-27 | 39 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 39 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-8 | 39 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 77 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
YYQPPLPPPP PPHPAIGGSS MFSVSPPKFI GSPTGKHPLY RGIRPRGGKW VSEIREPKKT 60 TRIWLGTWAT AEMAAAAYDA AALALKGTEA ILNFPQDALR YPVPPSSSAA DIRKAAATAA 120 AMKQDKEKNS STTTNADDLG LERVGKQGAE EEFIDIEAFF NMPNLLVDMA GGMMVSPPRM 180 SSTDDRDSPE NDDCIGEAGS LWSYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-14 | 35 | 95 | 3 | 63 | ATERF1 |
3gcc_A | 6e-14 | 35 | 95 | 3 | 63 | ATERF1 |
5wx9_A | 9e-14 | 36 | 97 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010669007.1 | 1e-134 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 1e-46 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A0J8BG19 | 1e-148 | A0A0J8BG19_BETVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_010669007.1 | 1e-133 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-32 | ERF family protein |
Publications ? help Back to Top | |||
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