PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_016700_rsmq.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HB-other | ||||||||
Protein Properties | Length: 210aa MW: 23170 Da PI: 7.0423 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.6 | 3.6e-07 | 31 | 75 | 22 | 56 |
SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 + p +e+ eLA+k ++ +qV +WFqNrR+ + Bv_016700_rsmq.t1 31 GHVPAREHLVELAQKFsnsperagkiTVQMKQVWNWFQNRRYALR 75 56788888888888888888888888999************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-9 | 7 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 13 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.199 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.12E-5 | 13 | 77 | No hit | No description |
Pfam | PF00046 | 1.6E-4 | 32 | 74 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRPPTHGAP SFRFHPAEVA HMEAVLRDHG GHVPAREHLV ELAQKFSNSP ERAGKITVQM 60 KQVWNWFQNR RYALRSKLVK SPNPRDMPPN PRDEVAVAPL RMVPPAPQQT LVPSGHNVIR 120 NASENPPMEF EAKSARDGAW YDVQAFLSHR YLETGNPTVT VLEAEKVGSS EPSEPTMPVS 180 TAITDGDPTV SKMEESSNVN VSAEHTNGLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010668440.1 | 1e-154 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 5e-51 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A0J8B465 | 1e-153 | A0A0J8B465_BETVU; Uncharacterized protein | ||||
STRING | XP_010668440.1 | 1e-153 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 2e-50 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |