PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_013540_iojx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 462aa    MW: 54008.7 Da    PI: 4.701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_013540_iojx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49e-122052891299
                        HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        + + +++p k+++++ +++   +  + l+  +gr+W+v+l   k sg+ +l+kGW+ F ++  ++ g  v+F++++  +e  ++v +++k
  Bv_013540_iojx.t1 205 QDDKIRIPAKYVKRYyEKQ-FAKDYVNLRAADGRVWRVEL--LKVSGTLWLSKGWEVFLESYSIEYGYLVLFSYKEIeDE--FHVNIYDK 289
                        567899*********6444.44458***************..********************************975455..59999987 PP
2B335.61.7e-11361461399
                        EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        k  ++  +l+s  l++p ++a+eh +gk++e  +++le +   r ++v++++    + k ++ + ++  ++F  +n+Lk gD +vF+l++ +
  Bv_013540_iojx.t1 361 KSIVRRWSLTSWGLTIPLQYAREHlDGKNRE--KIILEGPGKmRYYNVNVNVylrnCVKEKALISGSVMRKFFTDNELKLGDCCVFELIHPQ 450
                        5666677788888***********8555444..7*****76666666666444533666666888999*********************999 PP

                        EE..EEEEE-S CS
                 B3  89 efelvvkvfrk 99 
                        + +++ ++fr+
  Bv_013540_iojx.t1 451 SNTYKATIFRA 461
                        99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-17192292IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-13193288No hitNo description
SuperFamilySSF1019361.79E-15193292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35194290IPR003340B3 DNA binding domain
SMARTSM010194.2E-5196290IPR003340B3 DNA binding domain
PfamPF023622.0E-9205289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-10352460IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-10354460IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-11358460No hitNo description
SMARTSM010194.9E-5359462IPR003340B3 DNA binding domain
PROSITE profilePS508638.106359462IPR003340B3 DNA binding domain
PfamPF023621.7E-9361461IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNILNDIHDE SVKQGVGLPP NFRLYYKNPR TKQRVELYKD VQMSNMWGGF AGKDAIEIFI  60
EETNQPLRFV FKFVLELREQ AEKEREEERR RQEEEEKILR ELENQEPPLA IEIPVYSVDD  120
LSVMEWYRVY SEEEVVMGES EPQPDATQPE YPPSSPRSSP VTQPPQPPSS PLPSSATQPP  180
RPPSKKRRDK MAPSFYKKMG VCSTQDDKIR IPAKYVKRYY EKQFAKDYVN LRAADGRVWR  240
VELLKVSGTL WLSKGWEVFL ESYSIEYGYL VLFSYKEIED EFHVNIYDKT CCEIVHEFAF  300
ENHTDKAEEV VGFSSEHEDI DRDDDDDDDD DDDCIVPYSE EGPNGSTKEF EEFESLNPHF  360
KSIVRRWSLT SWGLTIPLQY AREHLDGKNR EKIILEGPGK MRYYNVNVNV YLRNCVKEKA  420
LISGSVMRKF FTDNELKLGD CCVFELIHPQ SNTYKATIFR AP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189KKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668004.10.0PREDICTED: B3 domain-containing protein Os12g0592300-like
TrEMBLA0A0J8B1W50.0A0A0J8B1W5_BETVU; Uncharacterized protein
STRINGXP_010668004.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-14B3 family protein