PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_013250_pgya.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 326aa    MW: 36064 Da    PI: 7.6618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_013250_pgya.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l+++ +++G+g +W + +++ g++R++k+c++rw++yl
  Bv_013250_pgya.t1 14 RGPWSPEEDATLKNYLHKHGTGgNWISLPQRAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding48.71.7e-1569111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g++T+eEd +++ ++ ++G++ W+ Ia+ ++ gRt++++k++w++
  Bv_013250_pgya.t1  69 GSFTEEEDNIIISLFYKMGSR-WSVIAANLP-GRTDNDVKNHWNT 111
                        79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.161962IPR017930Myb domain
SuperFamilySSF466898.2E-2811109IPR009057Homeodomain-like
SMARTSM007176.5E-121364IPR001005SANT/Myb domain
PfamPF002496.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-241569IPR009057Homeodomain-like
CDDcd001673.41E-91662No hitNo description
PROSITE profilePS5129424.63263117IPR017930Myb domain
SMARTSM007174.2E-1567115IPR001005SANT/Myb domain
PfamPF002492.5E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2470117IPR009057Homeodomain-like
CDDcd001675.85E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYLH KHGTGGNWIS LPQRAGLKRC GKSCRLRWLN  60
YLRPDIKHGS FTEEEDNIII SLFYKMGSRW SVIAANLPGR TDNDVKNHWN TKLKKKLFGG  120
SNNINKFNPS SIPKIDVSFT YNHNHNHINN NNVFNNNNPS IFQANPSSSN PTPSPSPSPT  180
PSYIDNTNHN FNHHHQSYVP ITSFSSLLAQ CSTTTTSPMS MMPNFASLSN MDHSIEFIQS  240
SPSRYSLHQS SPTGLAVQEN VAHPEELSSV SAGSSSAMYG SSLEDDPFFA ELGFGLIQEV  300
MMNPNCSTYG DQEDIKPQGL GQSVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-25141174105C-Myb DNA-Binding Domain
1msf_C2e-25141174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667955.10.0PREDICTED: transcription factor RAX1
TrEMBLA0A0J8B2200.0A0A0J8B220_BETVU; Uncharacterized protein
STRINGXP_010667955.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-72myb domain protein 36