PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_013090_tsop.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 328aa    MW: 38101.9 Da    PI: 9.69
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_013090_tsop.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-13331291100
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffk+ +++ + k++ l++p +f++++g     s  + l    s + W+v+l  +k++++ ++l+kGW++  +  ++  g f++F++dg s+ 
  Bv_013090_tsop.t1  33 FFKIIVSPFTQKLN-LRIPVEFVKKYGRH--LSDIIYLSVpNSEQPWKVQL--EKTDNKeMFLGKGWQDLMEFYNMMFGHFLLFRFDGGSQS 119
                        88999888888888.***********855..77788888845569******..777777789*************************99998 PP

                        ..EEEEE-SS CS
                 B3  91 elvvkvfrks 100
                        +++v +f+ks
  Bv_013090_tsop.t1 120 QFHVIIFDKS 129
                        89*****985 PP

2B353.34.9e-17229325198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...se 89 
                        f++++ +s+v+ +  l +p ++a+ + ++  + k+++l+ ++g+s++vk+    +++ + l +GWk+Fv +n+L++gD ++F+l+++   s+
  Bv_013090_tsop.t1 229 FKSIMYHSHVTYKYKLAVPSSHASIYFSS--KCKEIILNGPNGKSYSVKV--YVGKKITELLNGWKSFVLDNDLQVGDACIFELINKnsrSK 316
                        788999*****************888766..5679***************..44444555666********************984322355 PP

                        E..EEEEE- CS
                 B3  90 felvvkvfr 98 
                          ++v++fr
  Bv_013090_tsop.t1 317 NAYKVSIFR 325
                        556666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1826129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1926129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-1131127No hitNo description
PROSITE profilePS5086311.68832129IPR003340B3 DNA binding domain
SMARTSM010195.6E-1233129IPR003340B3 DNA binding domain
PfamPF023622.3E-933128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-20224325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-21224326IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-20227325No hitNo description
SMARTSM010199.3E-12229327IPR003340B3 DNA binding domain
PfamPF023621.4E-15229325IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662229327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRSSRLMKIQ KTEAPTNCDP KIQFASEDNK PYFFKIIVSP FTQKLNLRIP VEFVKKYGRH  60
LSDIIYLSVP NSEQPWKVQL EKTDNKEMFL GKGWQDLMEF YNMMFGHFLL FRFDGGSQSQ  120
FHVIIFDKSA TEIDYPMRKV SCAMKRKYDL KNKVVEEENE EDDISIEILD EFSPKLKQVK  180
TTVSLDSSAI YDVECSSYKS KGNDKISVDM RQKRLKRKLD AFVSSYPHFK SIMYHSHVTY  240
KYKLAVPSSH ASIYFSSKCK EIILNGPNGK SYSVKVYVGK KITELLNGWK SFVLDNDLQV  300
GDACIFELIN KNSRSKNAYK VSIFRISS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667920.20.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0J8B1X40.0A0A0J8B1X4_BETVU; Uncharacterized protein
STRINGXP_010667920.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-18B3 family protein