PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv_013090_tsop.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 328aa MW: 38101.9 Da PI: 9.69 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9.2e-13 | 33 | 129 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+ +++ + k++ l++p +f++++g s + l s + W+v+l +k++++ ++l+kGW++ + ++ g f++F++dg s+ Bv_013090_tsop.t1 33 FFKIIVSPFTQKLN-LRIPVEFVKKYGRH--LSDIIYLSVpNSEQPWKVQL--EKTDNKeMFLGKGWQDLMEFYNMMFGHFLLFRFDGGSQS 119 88999888888888.***********855..77788888845569******..777777789*************************99998 PP ..EEEEE-SS CS B3 91 elvvkvfrks 100 +++v +f+ks Bv_013090_tsop.t1 120 QFHVIIFDKS 129 89*****985 PP | |||||||
2 | B3 | 53.3 | 4.9e-17 | 229 | 325 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...se 89 f++++ +s+v+ + l +p ++a+ + ++ + k+++l+ ++g+s++vk+ +++ + l +GWk+Fv +n+L++gD ++F+l+++ s+ Bv_013090_tsop.t1 229 FKSIMYHSHVTYKYKLAVPSSHASIYFSS--KCKEIILNGPNGKSYSVKV--YVGKKITELLNGWKSFVLDNDLQVGDACIFELINKnsrSK 316 788999*****************888766..5679***************..44444555666********************984322355 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++v++fr Bv_013090_tsop.t1 317 NAYKVSIFR 325 556666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 26 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 26 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-11 | 31 | 127 | No hit | No description |
PROSITE profile | PS50863 | 11.688 | 32 | 129 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-12 | 33 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-9 | 33 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 224 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-21 | 224 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-20 | 227 | 325 | No hit | No description |
SMART | SM01019 | 9.3E-12 | 229 | 327 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 229 | 325 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.662 | 229 | 327 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MRSSRLMKIQ KTEAPTNCDP KIQFASEDNK PYFFKIIVSP FTQKLNLRIP VEFVKKYGRH 60 LSDIIYLSVP NSEQPWKVQL EKTDNKEMFL GKGWQDLMEF YNMMFGHFLL FRFDGGSQSQ 120 FHVIIFDKSA TEIDYPMRKV SCAMKRKYDL KNKVVEEENE EDDISIEILD EFSPKLKQVK 180 TTVSLDSSAI YDVECSSYKS KGNDKISVDM RQKRLKRKLD AFVSSYPHFK SIMYHSHVTY 240 KYKLAVPSSH ASIYFSSKCK EIILNGPNGK SYSVKVYVGK KITELLNGWK SFVLDNDLQV 300 GDACIFELIN KNSRSKNAYK VSIFRISS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667920.2 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0J8B1X4 | 0.0 | A0A0J8B1X4_BETVU; Uncharacterized protein | ||||
STRING | XP_010667920.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-18 | B3 family protein |