PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_012640_iicn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bZIP
Protein Properties Length: 434aa    MW: 48475.4 Da    PI: 6.5097
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_012640_iicn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-10146178537
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvke 37 
                        k  rr+++NReAAr+sR+RKka++++Le    +
  Bv_012640_iicn.t1 146 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLK 178
                        6789***********************984333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-8142205IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-8142190No hitNo description
PROSITE profilePS502179.14144186IPR004827Basic-leucine zipper domain
PfamPF001707.0E-8146180IPR004827Basic-leucine zipper domain
CDDcd147081.89E-21146194No hitNo description
SuperFamilySSF579593.8E-7146184No hitNo description
PROSITE patternPS000360149164IPR004827Basic-leucine zipper domain
PfamPF141441.8E-29230304IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MQIYREEMYC HPNYIFRGDE NSTHNTGELE HPVVFHQQDA VNLSRSALCG LRSGNIAFPS  60
SLPFGASNGN NYLAPASVAE TVEAVAEKRG QLEYWGESGV AMADTSQHTD TSTDVDTDDR  120
NQYHVIQNGA VVDSTDQFKG RTDDPKTLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLA  180
QLEQELDRAR QQGFMVTGAG SEPGHSLGTN GVVAFDVHYG HWLDKHQRLI NDTRSALNSH  240
ASDDELRVLV ESLMSNFDEL FRIKGTAAKS DIFHLLSGMW KTPAERCFMW LGGFRSSELL  300
KILVNHLEPL TEQQLMGICN LQQSSQQAED ALSQGMEALQ QSLVDTLSAN CLSPSNTGVV  360
ADYMGQMAIA MGKLATLENF VHQADLLRQQ TLQQMHRILT TRQAARALLV IHDYTTRLRA  420
LSSLWLARPK NCDA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3031331e-136KF303133.1 Beta vulgaris genotype 2_SB34_a SNP marker Bakooie genomic sequence.
GenBankKF3031341e-136KF303134.1 Beta vulgaris genotype 3_SB34_b SNP marker Bakooie genomic sequence.
GenBankKF3031351e-136KF303135.1 Beta vulgaris genotype 6_SB33 SNP marker Bakooie genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667846.10.0PREDICTED: transcription factor TGA2 isoform X1
SwissprotQ415581e-159HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0J8B2050.0A0A0J8B205_BETVU; Uncharacterized protein
STRINGXP_010667846.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-138bZIP family protein