PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_012080_sqjh.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 1172aa MW: 130727 Da PI: 9.3466 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE +++++a +++G++ Wk++a + +R+ +++ Bv_012080_sqjh.t2 46 QWSKEELQRFYEAYRKYGKD-WKKVAVAVR-NRSVEMV 81 6*****************99.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-10 | 42 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.541 | 42 | 95 | IPR017884 | SANT domain |
SMART | SM00717 | 6.7E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-5 | 46 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-8 | 46 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-6 | 47 | 81 | No hit | No description |
SMART | SM01135 | 2.2E-57 | 640 | 741 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.1E-31 | 640 | 740 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1172 aa Download sequence Send to blast |
MAPTRKSRSV NKRFTYPNEG SPTKDGDSAN KSNKRKRKVS DMLGPQWSKE ELQRFYEAYR 60 KYGKDWKKVA VAVRNRSVEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGTDS 120 EQESNDGVGV PRKPHKRTRG KLHPNTARNI SDVSHSQSVA SSYGCLSLLK KRRSGGNQPR 180 AVGKRTPRIP VRYTYDKDSI GRYISPVRQG LKSKLDADDD DVAHEVALAL AEASHRGSSP 240 QVSQTPNKRR EAVVKSPVGL GERVCSESEM TSANNIGNDM DDGCEGSLGS TEGENNFSLE 300 KPQPSGRKGV GTFVQQKAKK SYGKKVEVED TGHHYGDDEK EACSGTEGGQ KFSSFETKQT 360 RDVTFTHSSG QAFKKRSKKV LFGGDEGVAL DALQALADLS LMMPSSTAEA EPIVPIKEEK 420 ESDIDKFRQQ DTISTSQRVK PKASPSKKKG DQSVLNTQVS VSRKSKPGKP SAPNSSPVAD 480 TKDSGMRKRK PKSSVSKNAS AEAQMDSHAN AVQEKEYSDK GMKSVNKSRH FPINAFQQQL 540 GQLVRISEHS SSSTDIRRDG DDSAVSSVQA PETIKINLLT KYRSRRKVDK SQIQRSDVFV 600 NEKSNASGQL YHDKTVYLKE RLCSCLSNYR VRRWCVYEWF YSAIDYPWFA KSEFVEYLYH 660 VGLGHVPRLT RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLN YYRESVRSHY TELRMGRREG 720 LPTDLARPLT VGQRVIAIHP RSREIHDGSV LTVDHNRCRV QFDRPELGVE FVEDIDCMPL 780 NPSENMPTSL TRHNIAVDKF HEALKQFKAS ERSDDRVKEE IIKFTPSQKV ENADGPSNVS 840 PVFMMSNLSK QTKEGFVSPS SHEKVGHGEI ISPRQALTSQ QSALSQFQSK EADIRALAEL 900 TRALDKKNSL VTELKRMNDD VSEDNSLKDV DSFKKQYAAV LVQLNEVLDQ VSSALMCLRQ 960 RNTYQGNSLV PWQTGKTSLE DHSSIVSSLN CLPCDSQRKV SHVCEIIDTS RIKARNMVDA 1020 ALKAVSSLRL AAESVQKIEE AVDFVNNRLV FDYSSMPMQT NQINGSLTHH DQPSPCTLNM 1080 VASDQALNSR SNGASTPCEP QIPSELIAHC VATLLMIQKC TERQFPPAEV AQILDLAVTS 1140 LQPCCSQNIP IYTEIQKCMG IIRSQILALV PT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667784.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
TrEMBL | A0A0J8DWA1 | 0.0 | A0A0J8DWA1_BETVU; Uncharacterized protein | ||||
STRING | XP_010667784.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |