PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_012080_sqjh.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 1151aa MW: 128291 Da PI: 9.2064

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_012080_sqjh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	1.9e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE +++++a +++G++ Wk++a + +R+ +++ Bv_012080_sqjh.t1 46 QWSKEELQRFYEAYRKYGKD-WKKVAVAVR-NRSVEMV 81 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.95E-10	42	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.541	42	95	IPR017884	SANT domain
SMART	SM00717	6.7E-5	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-5	46	80	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.26E-6	47	81	No hit	No description
SMART	SM01135	2.2E-57	619	720	IPR033471	DIRP domain
Pfam	PF06584	1.1E-31	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence Send to blast
MAPTRKSRSV NKRFTYPNEG SPTKDGDSAN KSNKRKRKVS DMLGPQWSKE ELQRFYEAYR 60 KYGKDWKKVA VAVRNRSVEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGTDS 120 EQESNDGVGV PRKPHKRTRG KLHPNTARNI SDVSHSQSVA SSYGCLSLLK KRRSGGNQPR 180 AVGKRTPRIP VRYTYDKDSI GRYISPVRQG LKSKLDADDD DVAHEVALAL AEASHRGSSP 240 QVSQTPNKRR EAVVKSPVGL GERVCSESEM TSANNIGNDM DDGCEGSLGS TEGENNFSLE 300 KPQPSGRKGV GTFVQQKAKK SYGKKVEVED TGHHYGDDEK EACSGTEGGQ KFSSFETKQT 360 RDVTFTHSSG QAFKKRSKKV LFGGDEGVAL DALQALADLS LMMPSSTAEA EPIVPIKEEK 420 ESDIDKFRQQ DTISTSQRVK PKASPSKKKG DQSVLNTQVS VSRKSKPGKP SAPNSSPVAD 480 TKDSGMRKRK PKSSVSKNAS AEAQMDSHAN AVQEKEQQLG QLVRISEHSS SSTDIRRDGD 540 DSAVSSVQAP ETIKINLLTK YRSRRKVDKS QIQRSDVFVN EKSNASGQLY HDKTVYLKER 600 LCSCLSNYRV RRWCVYEWFY SAIDYPWFAK SEFVEYLYHV GLGHVPRLTR VEWGVIRSSL 660 GKPRRFSEQF LKEEKEKLNY YRESVRSHYT ELRMGRREGL PTDLARPLTV GQRVIAIHPR 720 SREIHDGSVL TVDHNRCRVQ FDRPELGVEF VEDIDCMPLN PSENMPTSLT RHNIAVDKFH 780 EALKQFKASE RSDDRVKEEI IKFTPSQKVE NADGPSNVSP VFMMSNLSKQ TKEGFVSPSS 840 HEKVGHGEII SPRQALTSQQ SALSQFQSKE ADIRALAELT RALDKKNSLV TELKRMNDDV 900 SEDNSLKDVD SFKKQYAAVL VQLNEVLDQV SSALMCLRQR NTYQGNSLVP WQTGKTSLED 960 HSSIVSSLNC LPCDSQRKVS HVCEIIDTSR IKARNMVDAA LKAVSSLRLA AESVQKIEEA 1020 VDFVNNRLVF DYSSMPMQTN QINGSLTHHD QPSPCTLNMV ASDQALNSRS NGASTPCEPQ 1080 IPSELIAHCV ATLLMIQKCT ERQFPPAEVA QILDLAVTSL QPCCSQNIPI YTEIQKCMGI 1140 IRSQILALVP T

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence Send to blast

MAPTRKSRSV NKRFTYPNEG SPTKDGDSAN KSNKRKRKVS DMLGPQWSKE ELQRFYEAYR  60
KYGKDWKKVA VAVRNRSVEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGTDS  120
EQESNDGVGV PRKPHKRTRG KLHPNTARNI SDVSHSQSVA SSYGCLSLLK KRRSGGNQPR  180
AVGKRTPRIP VRYTYDKDSI GRYISPVRQG LKSKLDADDD DVAHEVALAL AEASHRGSSP  240
QVSQTPNKRR EAVVKSPVGL GERVCSESEM TSANNIGNDM DDGCEGSLGS TEGENNFSLE  300
KPQPSGRKGV GTFVQQKAKK SYGKKVEVED TGHHYGDDEK EACSGTEGGQ KFSSFETKQT  360
RDVTFTHSSG QAFKKRSKKV LFGGDEGVAL DALQALADLS LMMPSSTAEA EPIVPIKEEK  420
ESDIDKFRQQ DTISTSQRVK PKASPSKKKG DQSVLNTQVS VSRKSKPGKP SAPNSSPVAD  480
TKDSGMRKRK PKSSVSKNAS AEAQMDSHAN AVQEKEQQLG QLVRISEHSS SSTDIRRDGD  540
DSAVSSVQAP ETIKINLLTK YRSRRKVDKS QIQRSDVFVN EKSNASGQLY HDKTVYLKER  600
LCSCLSNYRV RRWCVYEWFY SAIDYPWFAK SEFVEYLYHV GLGHVPRLTR VEWGVIRSSL  660
GKPRRFSEQF LKEEKEKLNY YRESVRSHYT ELRMGRREGL PTDLARPLTV GQRVIAIHPR  720
SREIHDGSVL TVDHNRCRVQ FDRPELGVEF VEDIDCMPLN PSENMPTSLT RHNIAVDKFH  780
EALKQFKASE RSDDRVKEEI IKFTPSQKVE NADGPSNVSP VFMMSNLSKQ TKEGFVSPSS  840
HEKVGHGEII SPRQALTSQQ SALSQFQSKE ADIRALAELT RALDKKNSLV TELKRMNDDV  900
SEDNSLKDVD SFKKQYAAVL VQLNEVLDQV SSALMCLRQR NTYQGNSLVP WQTGKTSLED  960
HSSIVSSLNC LPCDSQRKVS HVCEIIDTSR IKARNMVDAA LKAVSSLRLA AESVQKIEEA  1020
VDFVNNRLVF DYSSMPMQTN QINGSLTHHD QPSPCTLNMV ASDQALNSRS NGASTPCEPQ  1080
IPSELIAHCV ATLLMIQKCT ERQFPPAEVA QILDLAVTSL QPCCSQNIPI YTEIQKCMGI  1140
IRSQILALVP T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667785.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0J8B234	0.0	A0A0J8B234_BETVU; Uncharacterized protein
STRING	XP_010667784.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]