PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_011610_tatm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

BBR-BPC

Protein Properties

Length: 290aa MW: 32832.3 Da PI: 9.4313

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_011610_tatm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	269.5	1.7e-82	31	290	16	301
GAGA_bind 16 pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtk 106 +a ++ + +++ +l+ +iaerd++i+e n al+ek+ a+ er+ a qr+ a++er++a++erdn l al+ +++p +++v +gt+ Bv_011610_tatm.t1 31 QAkEQNALHMNRKLLNIIAERDDAIEEMNRALHEKRRALEERETAISQRNLAIKERDDAVMERDNVLNALQNSM----KQQPLSCGVQHGTN 118 334555668******************************************************999998744....45888888877776 PP GAGA_bind 107 sidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl 198 + +d+++ ++e++ l+a+ + a+ +++++ pk+ k++k +ks++++ + s++ +++++ l+l Bv_011610_tatm.t1 119 RL-----------ADQSYVTHEMHFLDAFCRTAVASGCNKSPQ---------PKKMKESKGCA--SKSRREK-QTSDHLKVRNNLYGESLGL 187 55...........578899999999888873332222222222.........23322222222..2333333.333347899999999 PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 n v++D+s +P+P CsCtG+ rqCYkWG+GGWqS+CCtttiSvyPLP +++r aR++grKmS+++f+klL++La eG+d+s pvD+kdhW Bv_011610_tatm.t1 188 NRVDYDDSIMPAPGCSCTGIFRQCYKWGTGGWQSSCCTTTISVYPLPPAPNKRYARLGGRKMSGSVFSKLLSRLALEGFDFSIPVDMKDHWS 279 **************************************************************************************** PP GAGA_bind 291 kHGtnkfvtir 301 kHGtn+++ti+ Bv_011610_tatm.t1 280 KHGTNRYITIK 290 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.4E-106	1	290	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.3E-81	13	290	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDVGGHRGGA RHKCDNIRES CPWNMVAYQH QAKEQNALHM NRKLLNIIAE RDDAIEEMNR 60 ALHEKRRALE ERETAISQRN LAIKERDDAV MERDNVLNAL QNSMKQQPLS CGVQHGTNRL 120 ADQSYVTHEM HFLDAFCRTA VASGCNKSPQ PKKMKESKGC ASKSRREKQT SDHLKVRNNL 180 YGESLGLNRV DYDDSIMPAP GCSCTGIFRQ CYKWGTGGWQ SSCCTTTISV YPLPPAPNKR 240 YARLGGRKMS GSVFSKLLSR LALEGFDFSI PVDMKDHWSK HGTNRYITIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667727.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
Refseq	XP_019103212.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
TrEMBL	A0A0J8B270	0.0	A0A0J8B270_BETVU; Uncharacterized protein
STRING	XP_010667727.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	5e-88	basic pentacysteine 4