PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_011420_aoao.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 589aa    MW: 64606.4 Da    PI: 6.6934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_011420_aoao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.34.6e-852005882374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselyk....alppsetsekn........sseelaa 80 
                        ++ L+++A+a++s+d ++++ +Larl+++ +sp g+p+qR+a+yf+eAL++  + s ++  +    ++ +++    +        +++++ a
  Bv_011420_aoao.t1 200 IDDLIRAAQAFESNDSQQVHVILARLNQRlRSPVGKPLQRAAFYFKEALQHLTNTSNNNNNNnnssSVGSTPP---RpvkltsyeVVQTIRA 288
                        578*************************99********************98887544333200002222222...1233555669999*** PP

               GRAS  81 lklfsevsPilkfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerL 165
                        +k+fs +sP+  fs ++aNqaIleav +g+  +HiiDfdi+ G++W++++++L +++++      +  lRiT+++++e     e + ++e+L
  Bv_011420_aoao.t1 289 HKAFSGISPVSLFSTFAANQAILEAVvDGSPFIHIIDFDIGFGGHWASFMRELVDKASDqaklatSIVLRITAIVPEE--FGIESKLVKENL 378
                        ************************963788*************************99543444436799*******66..7788899***** PP

               GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhr.lldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFl 254
                        ++fA+ l+++f++++++  ++e l++++ ++  gE+laV+l+  +++ +l++s s    ++++L  ++++sP  vvvv++e  +d++++sF 
  Bv_011420_aoao.t1 379 SQFARDLNLNFHIEFVLIPTFEILSFKSVKFIDGEKLAVHLSPGVFNrFLNNSRS---GISKFLGDLRGISPSCVVVVDKEvgIDTGTASFG 467
                        ****************************************999876615544444...456********************44455999*** PP

               GRAS 255 erflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          fl  +e+y+ +++s+e+  +       +  + +E ++l+++i  +v ++ +    r     +Wre++ +aG+++v +s++a  qa++llr
  Bv_011420_aoao.t1 468 PSFLAGIEFYTGMMESIEVASSGGFngsgDCLRRIETFVLRPRIFAAVEAAARVAAGR---RTTWREAFVTAGMRAVGFSQFADFQAECLLR 556
                        *****************8874332234458999***************9988884444...559**************************** PP

               GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        + ++ g++v +++g+++l W+drpLv++SaWr
  Bv_011420_aoao.t1 557 RAQVGGFQVAKRHGEMMLFWHDRPLVATSAWR 588
                        *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.983173568IPR005202Transcription factor GRAS
PfamPF035141.6E-82200588IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MKVPVSSTPQ TCNTATGKPL STTNSAPITA FHSPSNNHNN NNNNNNNNNN LCYEPTSVLD  60
LQRSPSPATA ATKTATPPPS DTKHNTNHPP TTAVDLDNLE GWDSILSELG LNDDSNTNNS  120
KLLLSQISPC ESHLTQVLPD FPSSQPFDHS QPPINLPSDY ANFCDFSYNQ NLNPNFGPFD  180
HQLHHQTNTN SNTNFGLDFI DDLIRAAQAF ESNDSQQVHV ILARLNQRLR SPVGKPLQRA  240
AFYFKEALQH LTNTSNNNNN NNNSSSVGST PPRPVKLTSY EVVQTIRAHK AFSGISPVSL  300
FSTFAANQAI LEAVVDGSPF IHIIDFDIGF GGHWASFMRE LVDKASDQAK LATSIVLRIT  360
AIVPEEFGIE SKLVKENLSQ FARDLNLNFH IEFVLIPTFE ILSFKSVKFI DGEKLAVHLS  420
PGVFNRFLNN SRSGISKFLG DLRGISPSCV VVVDKEVGID TGTASFGPSF LAGIEFYTGM  480
MESIEVASSG GFNGSGDCLR RIETFVLRPR IFAAVEAAAR VAAGRRTTWR EAFVTAGMRA  540
VGFSQFADFQ AECLLRRAQV GGFQVAKRHG EMMLFWHDRP LVATSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-2020558724377Protein SCARECROW
5b3h_D9e-2020558724377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667697.10.0PREDICTED: scarecrow-like protein 15
TrEMBLA0A0J8B5W80.0A0A0J8B5W8_BETVU; Uncharacterized protein
STRINGXP_010667697.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-115GRAS family protein