PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_010700_xqkf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 487aa    MW: 54153.1 Da    PI: 7.8088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_010700_xqkf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.37.9e-42173248277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        Cqv gC++dls+ak+yhrrhkvC+vhsk+++v+v+++eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Bv_010700_xqkf.t1 173 CQVYGCHKDLSSAKDYHRRHKVCDVHSKTSKVIVNNIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 248
                        **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-33167234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38171251IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MESWCFDSLE KGFVSNETIP QSDSTIRNRS VLMAWELKPP LSYENSVLIS SQESVENSCF  60
PELGIAEMIR KQFHHDSTKN VLNGNAGVGD MISPSLVTSN AISGDEESSS KISSSVMDTN  120
SRESSLIDLK LGGFGNKPNS DSTRAARVLS SAESSTPSKR ARVTSLSSQT AYCQVYGCHK  180
DLSSAKDYHR RHKVCDVHSK TSKVIVNNIE QRFCQQCSRF HLLGEFDDGK RSCRKRLAGH  240
NERRRKPQIG FGGRNGRSFQ SYTGSNFQGF SQTSKSFICP DILQRGTSHT ENYGTNDWVR  300
YVKVENETEC TQKPAYNCIN GQLHPKSTLP PSIIEKQWSF VDDTNNTKPQ SVFGENVNQY  360
TTPEIVSHSL FQTHSSAARN EEYTLLNAAS TVQGLPVISE SGCALSLLSS QSWNSSAHSS  420
GMPGDHSLII SSSSPCYPMN VKDRLSCENV PTIDLLQLSS QLHRVENRRQ SEPHKQETEG  480
FCRLRMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29164246284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667630.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A0J8DWK30.0A0A0J8DWK3_BETVU; Uncharacterized protein
STRINGXP_010667630.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-49SBP family protein