PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_009730_sjwa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 278aa    MW: 31642.3 Da    PI: 6.6764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_009730_sjwa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l+d++ q+G  +W++++   g+ R +k+c++rw +yl
  Bv_009730_sjwa.t1 15 KGLWSPEEDQRLKDYILQYGISCWSSVPLIAGLQRNGKSCRLRWINYL 62
                       678*******************************************97 PP
2Myb_DNA-binding53.84.3e-1768113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg ++t+E++l++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
  Bv_009730_sjwa.t1  68 RGMFSTQEEKLILTLHQTLGNK-WSQIAKHLP-GRTDNEIKNYWHSYL 113
                        788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9151062IPR017930Myb domain
SuperFamilySSF466891.25E-2813109IPR009057Homeodomain-like
SMARTSM007179.4E-101464IPR001005SANT/Myb domain
PfamPF002491.5E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-201669IPR009057Homeodomain-like
CDDcd001671.22E-81862No hitNo description
PROSITE profilePS5129423.86363117IPR017930Myb domain
SMARTSM007175.7E-1567115IPR001005SANT/Myb domain
PfamPF002495.8E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2570116IPR009057Homeodomain-like
CDDcd001671.50E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGLRSSEKPT KKHKKGLWSP EEDQRLKDYI LQYGISCWSS VPLIAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSTQEEKLIL TLHQTLGNKW SQIAKHLPGR TDNEIKNYWH SYLKKRASIS  120
RDAEATYTEP KFADISNTEE NDFLVNQRNT SFESGEQVQS HESFLPKLAF ADWLPISNNV  180
GQNGLINYQL TSEKTGFDCT AEKQDEFLNG FGYINEAGSS SSSDKFCEDG GDDLRKGMLD  240
SPFRFKDQSA LGSDFIDFSA GDMLYSGYYY MSNSGIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667575.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A0J8B2S60.0A0A0J8B2S6_BETVU; Uncharacterized protein
STRINGXP_010667575.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.15e-63myb domain protein 19