PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_009300_xpqm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25391.1 Da PI: 9.8453 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 132 | 218 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ps+v+ +l lp +f+++ ++ +++ ++tl de g+++ v + rk++ l++GWk+F++ ++L +gD v+F+++++s +v Bv_009300_xpqm.t1 132 PMLPSHVTGGFWLGLPSDFCRTS-LP-RNDGMVTLVDEVGEEYPVVYLARKRG----LSGGWKGFAETHELVDGDAVIFQVISHSVL--KVY 215 6899****************777.34.34559***************555555....9**********************8876655..888 PP EE- CS B3 96 vfr 98 ++r Bv_009300_xpqm.t1 216 IIR 218 777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-21 | 125 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-17 | 126 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-22 | 127 | 218 | No hit | No description |
SMART | SM01019 | 5.3E-19 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.139 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 132 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGNLSYEECR QKRVEENKKR LEDLNLFHLS QALKNLSPKS SPMKKVGKPR TVEKKMVAVR 60 RSPRVANSPA PVYAEVSVTR ISSPRKNYGV VRARDLSNRV IATDDVREYA IEEAEKLNAK 120 LNEEGFPTLV RPMLPSHVTG GFWLGLPSDF CRTSLPRNDG MVTLVDEVGE EYPVVYLARK 180 RGLSGGWKGF AETHELVDGD AVIFQVISHS VLKVYIIRGS GQEVGTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667517.1 | 1e-167 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 4e-64 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0J8B623 | 1e-166 | A0A0J8B623_BETVU; Uncharacterized protein | ||||
STRING | XP_010667517.1 | 1e-167 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-66 | B3 family protein |
Publications ? help Back to Top | |||
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