PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007920_ifhw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 269aa    MW: 30679.5 Da    PI: 6.7907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007920_ifhw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-1359101754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YIk+L
  Bv_007920_ifhw.t1  59 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAINYIKEL 101
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1752116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.59652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-1155106No hitNo description
SMARTSM003539.1E-1558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1658118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1059101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDSLIDEYPI YWESDIGMYF QSQELDNSWA FEDTISSYYD YDSSSPDGSA SSMASKNIVS  60
ERNRRKKLNE RLFALRAVVP NISKMDKASI IKDAINYIKE LHEQERRIKA DISDLEYRKS  120
KSNGNGNGNG NGNGNGNENS CSMMDYEQEL PSLLIKSKKK RIDHRKQYQQ QQHYDSNGSC  180
RSSVINDLEV RVSYVGERTI VVSLTCSKRE GTMVKLCEMF ESLKLKIITA HITAFAGRLL  240
KTVFLEADEG EKDHLRIKIE TVISSSHSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667303.10.0PREDICTED: transcription factor bHLH35
TrEMBLA0A0J8B3970.0A0A0J8B397_BETVU; Uncharacterized protein
STRINGXP_010667303.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-61bHLH family protein