PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003250_arsd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 270aa    MW: 30385 Da    PI: 5.0227
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003250_arsd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36101012102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++de+++++isw e+g +fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkk++++l
  Bv_003250_arsd.t1  10 FLTKTYKMVDDESTNDVISWGEKGITFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFKKDQQDL 92 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  Bv_003250_arsd.t1  93 LSDIRRRKT 101
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.4E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.6E-4133172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGQRSIPAPF LTKTYKMVDD ESTNDVISWG EKGITFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFKKDQQ DLLSDIRRRK TTLTGKISGV GGSQSVSGDE  120
AGSTSTSSPG SVEIADLSGE NEKLRRDNEM LSSELAQTKK QCEDLMGFLS AHLKVGRDEI  180
NQIIREEIVD NLPRGPPEDG LVSEDDFNDV NEKNDDDEKE GLKLFGVWLK EVGGIEEGKK  240
RGRCYDFQGD NNSNLGLNGT QCPRKVMKIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-25210413125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666616.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223355e-82HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0J8B4520.0A0A0J8B452_BETVU; Uncharacterized protein
STRINGXP_010666616.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-78heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]