PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001490_yywz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 787aa    MW: 88651.5 Da    PI: 5.9599
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001490_yywz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.47.1e-37126203178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv+gCead+ e+k yhrrh+vC v+++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k+a
  Bv_001490_yywz.t1 126 RCQVPGCEADIRELKGYHRRHRVCLVCANATSVVLDGQSKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRRRKSA 203
                        6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-29123188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.829124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-34125204IPR004333Transcription factor, SBP-box
PfamPF031102.2E-27127201IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MEIPPLTAGE EESATQFEWS ELLDFTIDDQ LLLNLEVSDH GENQLPVVYP TESGGELEKS  60
LTENGAETGS SDRVRKRDPR MSCENFLAGI VPCACPELDA MMMMEEEEAG PGKKRPRIGR  120
MPGVARCQVP GCEADIRELK GYHRRHRVCL VCANATSVVL DGQSKRYCQQ CGKFHVLPDF  180
DEGKRSCRRK LERHNNRRRR KSADSKGAVE KELDGDLQTE VFSDGEAGKE NAWSSSQIAE  240
KEDSKDGTVS NLCSALESQN IESDSILTFT HVDKAIDNSE QDYSPLDTKS AYTSVCPTGR  300
ISFKLYDWNP AEFPRRLRHQ IFQWLSSMPV ELEGYIRPGC TILTIFVSMP QHMWVKLFED  360
PVSYVRSSVG HGGMLSGRGA ALVYLNDTSY RVMRDGASVM KVKVAVRAPK LHYVYPPCFE  420
AGKPMDLIAC GSNLLQPKFR SLISFAGKYL AHDYYVAFPR GKGGHDTATD YDHQFCRIYV  480
PHTEPTYSGP AFVEVENECG LSNFIPILIG DEHVCSEIKM IHQKYDCSYC RKKLQYKPIG  540
SSRRTCEGSC SRQAALSEFT LDVAWLLKQP CSEKLHCILT SYQIQRFNCL LKFLMSNKST  600
SILEKVVQSL QFVFDEMNSS EVTHDVNDTD RRLFTEYISH ARDFLHQSAY ENEVMLQQAG  660
DGVPKGDKYL ESFPHDDVLS VDGTVCQGTE MKADMNCPLL EYSNCQGEGE SNSLMNAEVA  720
MHVDDNREWP RKSCNYMISK KVINPRPFLY MIAVVAVCFG VCAVVFHPDK VNKFAVTIRT  780
CVFDNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-41124209388squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187199RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666331.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A0J8B8870.0A0A0J8B887_BETVU; Uncharacterized protein
STRINGXP_010666331.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7