PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001400_entg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 310aa    MW: 35192.7 Da    PI: 6.3619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001400_entg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-182875148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Bv_001400_entg.t1 28 RGPWTVEEDLSLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                       89********************************************97 PP
2Myb_DNA-binding50.64.5e-1681124146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Bv_001400_entg.t1  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0212375IPR017930Myb domain
SuperFamilySSF466896.39E-3125122IPR009057Homeodomain-like
SMARTSM007173.0E-152777IPR001005SANT/Myb domain
PfamPF002491.2E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-232982IPR009057Homeodomain-like
CDDcd001671.34E-123075No hitNo description
PROSITE profilePS5129422.91776130IPR017930Myb domain
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PfamPF002497.6E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2283129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDVNMRSSTH STKSANSQSS EDESDLRRGP WTVEEDLSLI NYIATHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLKCDVNSK QFKDTMRYLW MPRLVERIQA ANGVQPTATA STSGGSSITT  180
ATGRPAMGYS ENFIHAPVNS NFTPENSANS SESFGNQVSD FGDYYGIPVN NQSVSQDYFQ  240
GEQVGYGGDY SLTSPNCAYL NNQGMSFQSV DNVMDQNNQQ QWDNFGLGDT TDNLWNVDDI  300
YVLQQQFSNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-262512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666321.10.0PREDICTED: transcription factor MYB108
SwissprotQ9FGY31e-91MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0J8B5B60.0A0A0J8B5B6_BETVU; Uncharacterized protein
STRINGXP_010666321.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-89myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]