PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001020_pprz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 581aa    MW: 65935.8 Da    PI: 7.3408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001020_pprz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-12851651294
                        HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         s++l lp +f++++ g+++++    ++e+ ++++ W+v++  + ++gr+++++GW +Fv+ + L++g +++F+++++s f+ ++
  Bv_001020_pprz.t1  85 FSKQLQLPEEFTANItGYVPHR---FIIESgTTNKCWRVEVE-KDGDGRMYFRDGWADFVEFHSLEVGNILLFEYEEQSIFQARI 165
                        356799******8888888766...666665888*******4.34444589************************9878775554 PP
2B340.64.5e-132643401493
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        ++l++pk    +++++  ++ +l+++d +g+ W++ l   +++gr ++++GWkeF k+n++  gD + F++++++  +++
  Bv_001020_pprz.t1 264 NQLTVPKAVSLKMKLP--SKDELKIQDAQGKCWTLALG-HRRDGRALFSQGWKEFLKDNNVAPGDKLKFEFMSDEIVQCH 340
                        7899999999888888..4459***************5.556667899**********************9887655444 PP
3B3391.5e-124104811387
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +  l +pk  +++ ++ ++e   ++l+d++g+ W  +++ + +++r+ l+kGW eF k +gLk+gDf+ F+++++
  Bv_001020_pprz.t1 410 RTYLHMPKAIVRDQNLMNKE--NIVLRDPEGKCWPHEVK-KLTGNRVALAKGWVEFWKGHGLKTGDFLNFEFVSE 481
                        55678899999888555334..6***************3.556667*************************8763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1773171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1673171IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.33774169IPR003340B3 DNA binding domain
CDDcd100178.38E-1276166No hitNo description
SMARTSM010191.5E-577169IPR003340B3 DNA binding domain
PfamPF023627.3E-1086164IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-17245345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-16246345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-8250331No hitNo description
SMARTSM010191.1E-6251347IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703251345IPR003340B3 DNA binding domain
PfamPF023621.0E-10264335IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844398492IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16398490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-17399490IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-4400492IPR003340B3 DNA binding domain
PfamPF023622.8E-10411481IPR003340B3 DNA binding domain
CDDcd100176.30E-11413490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLDISLATMW PRGLINSVKI VNLLLQFNNS FKHKKEGKQK TEMESDGSHK QLHKAISVNM  60
QCEMQNKPMF SCKGASFIKV LGRDFSKQLQ LPEEFTANIT GYVPHRFIIE SGTTNKCWRV  120
EVEKDGDGRM YFRDGWADFV EFHSLEVGNI LLFEYEEQSI FQARIYGRNG CEKTLLLDSK  180
GGQCKPLKTI NDDDGEESEA LDEPVIVKCS RQKTRSLSSR KYGNGIYKKR TVNRDYRRTA  240
KVSVTQNNLC FSVIMHYRKR HQFNQLTVPK AVSLKMKLPS KDELKIQDAQ GKCWTLALGH  300
RRDGRALFSQ GWKEFLKDNN VAPGDKLKFE FMSDEIVQCH VTRASEVNEH QSNEPTRSSD  360
MDCNLDKPNT RIVSRAPKNR AGGISMTSKR RMSCESGSSF SVMWRDSCAR TYLHMPKAIV  420
RDQNLMNKEN IVLRDPEGKC WPHEVKKLTG NRVALAKGWV EFWKGHGLKT GDFLNFEFVS  480
ENLVQVNINR GKPQHEPNVE DTVIYLDAID DEEAAAIEPE AVITQQAGLQ AGIEPEVGIT  540
HEGFDAAFSA EAGITQEGYD AAMETEAFIT LEAFDEATTQ V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666269.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0J8B8P30.0A0A0J8B8P3_BETVU; Uncharacterized protein
STRINGXP_010666269.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-20B3 family protein