PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001010_nrdw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 437aa    MW: 49830.7 Da    PI: 6.6754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001010_nrdw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-151942651690
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        l++pk  ++   ++  ++  ++l++++g+sW v+l++r  + r+ l kGW++Fv++n+L +gD++++++++++  
  Bv_001010_nrdw.t1 194 LTIPKAMLSGKILS--NKDRVILQNRDGNSWPVELKMRPDG-RMDLHKGWRQFVEDNNLTTGDTLILEFVSNNVI 265
                        78888888666333..2236***************766654.579***********************8876554 PP
2B351.51.9e-163394221198
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++++ l +pk  a++ +++++   t++l d++g++W ++++ r+++gr+  ++GW +F+ka g+ +gD+++F+++   +  ++v+v++
  Bv_001010_nrdw.t1 339 TRNSYLHIPKAIANKQKLEHK--DTVVLCDPEGKQWLMEVRTRQSDGRVGVGRGWADFAKAYGIGVGDTLIFEFVT--DHMMKVHVIK 422
                        5677899******99988754..49************************************************875..4445677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1510107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.58811106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-1612111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-913103No hitNo description
SMARTSM010191.4E-614106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-18179271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.747179273IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-19179271IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-9180273IPR003340B3 DNA binding domain
CDDcd100172.49E-14190271No hitNo description
PfamPF023628.2E-13194263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-20329424IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.479329424IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-19330424IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-12336424IPR003340B3 DNA binding domain
PfamPF023628.2E-14339422IPR003340B3 DNA binding domain
CDDcd100179.20E-17340422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDNKRKLSFK RASFMKILED SFINKLPIPP AFAKIFEECI PPWLILEIAG TRKCWRVDIE  60
EDGNGRMYLS CGFDCFVKAH SLEAGNFLLF ELEEPSILQV KIYEKDGSEK AVGTTFETDY  120
EGSAFESPRR TPIIHQEGES SPWYTMPSVQ YEAYEKQQNA IGGNKRKKGI VSATEHGLCF  180
SVTWRNANHF IYYLTIPKAM LSGKILSNKD RVILQNRDGN SWPVELKMRP DGRMDLHKGW  240
RQFVEDNNLT TGDTLILEFV SNNVIQVHVK RAFQVGNPPQ SGQDCQIEDT QFFNMACENE  300
ELAANYTTEN NTPVTVAKTE RFSSELIRSS FAITWTQKTR NSYLHIPKAI ANKQKLEHKD  360
TVVLCDPEGK QWLMEVRTRQ SDGRVGVGRG WADFAKAYGI GVGDTLIFEF VTDHMMKVHV  420
IKASTEGTIK QELLQLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666268.20.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0J8B5C20.0A0A0J8B5C2_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-19B3 family protein