PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_000790_ezhe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 410aa    MW: 45257.4 Da    PI: 4.8534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_000790_ezhe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-162572148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++ Ed  lvd+vk++G g+W+++ r  g+ R++k+c++rw ++l
  Bv_000790_ezhe.t1 25 KGPWSAAEDAVLVDYVKLHGEGNWNAVQRNTGLQRCGKSCRLRWANHL 72
                       79******************************************9986 PP
2Myb_DNA-binding51.62.1e-1678121146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++  E+ l++d++++lG++ W++I+++++ gRt++++k++w++
  Bv_000790_ezhe.t1  78 KGAFSSHEERLIIDLHAKLGNK-WARISAHLP-GRTDNEIKNYWNT 121
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3612072IPR017930Myb domain
SuperFamilySSF466893.44E-2924119IPR009057Homeodomain-like
SMARTSM007171.7E-122474IPR001005SANT/Myb domain
PfamPF002491.1E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-222679IPR009057Homeodomain-like
CDDcd001672.24E-102772No hitNo description
PROSITE profilePS5129425.14373127IPR017930Myb domain
SMARTSM007171.3E-1577125IPR001005SANT/Myb domain
PfamPF002491.8E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2480127IPR009057Homeodomain-like
CDDcd001672.01E-1180121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MILNKGGGTA KEEVCGGSNG GVLKKGPWSA AEDAVLVDYV KLHGEGNWNA VQRNTGLQRC  60
GKSCRLRWAN HLRPNLKKGA FSSHEERLII DLHAKLGNKW ARISAHLPGR TDNEIKNYWN  120
TRVKRRIRQG LPLYPNDLPT PPPPYNPPTL PLSLPKTPPP TLSLFNPISL SSSVFSLHHP  180
PPLLPSQTLK RCSQQNSFMG NPVFSPSQMG PFQISPMGFG FDPGRKLDFG FGSPSFELPS  240
NQFSQNVTSN YVEEVEDDDE KVNPNNVGLS NSGLLDDLLQ EAQVKVGLKR DREQDCGLQW  300
DISSSENSST GNKKEELEDQ LINIDSQDLS NILELIPSLV QAPSWCNESG GESSAPQSSA  360
VSTDDNCNVF DDQMPQPPSF AAMNNTSFED DDGDDWNPGF YNWDNLPRIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28231275108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RVKRRIR
2187191TLKRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666224.10.0PREDICTED: myb-like protein A
TrEMBLA0A0J8B4X50.0A0A0J8B4X5_BETVU; Uncharacterized protein
STRINGXP_010666224.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-61myb domain protein 33