PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_000550_zstx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 495aa    MW: 54330.1 Da    PI: 5.4586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_000550_zstx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.4e-30244302259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+  +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Bv_000550_zstx.t1 244 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGsSCPVRKQVQRCAEDRTILITTYEGHHNHP 302
                        7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33228304IPR003657WRKY domain
SuperFamilySSF1182901.57E-27236304IPR003657WRKY domain
PROSITE profilePS5081129.08238304IPR003657WRKY domain
SMARTSM007748.3E-35243303IPR003657WRKY domain
PfamPF031067.3E-26245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MRRDDHENEH EKHSFKEVDF FHGSTCSRGF SEEDDHTINN SGVQDGYGED GNDDGLKLQI  60
DTGLKLQVSR TIDFVEKPIV DDEVEVLEIH DDNQNNKDEL VVLREEIVRK NVENQRLKTL  120
LNQVTNSYQA LQMQISTVRQ HQLDQNKSRK VHPTTETQND DETINERTKQ QMGQFLGPRD  180
DEQSNRSHDQ REDGANIGKS SISTNMQRVG MAPAATVEAE EAHEVTMRRA RVSVRARSEA  240
NMISDGCQWR KYGQKMAKGN PCPRAYYRCT MGSSCPVRKQ VQRCAEDRTI LITTYEGHHN  300
HPLPNAAVAM ASTTSSAASM LIAGSKSSTA IDGLLNPPMF SQPTALPGLP SLATISASAP  360
FPTITLDLTR PQGSQPQGNN SNIPCANTNG SGLASLMQQL LGQSPNNFNG SSELNRENHN  420
LPLIDPLSIA KAALAADPTL ASALAAAISS IIIKGNFESL TNNVNSNVNN NGKGNENVMQ  480
IDKDNNPDLS SFTQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21234304877Probable WRKY transcription factor 4
2ayd_A3e-21230304174WRKY transcription factor 1
2lex_A3e-21234304877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666199.10.0PREDICTED: WRKY transcription factor 42-like isoform X2
TrEMBLA0A0J8B8E80.0A0A0J8B8E8_BETVU; Uncharacterized protein
STRINGXP_010666198.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-70WRKY family protein