PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_225950_hzuo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 441aa    MW: 48382.3 Da    PI: 6.064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_225950_hzuo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-3047103259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vkg+e+ rsYY+C++++C+vkk+vers+ d+++++itY g+H+h 
  Bv9_225950_hzuo.t1  47 EDGYNWRKYGQKNVKGNEYIRSYYKCSHPNCQVKKQVERSQ-DGRITDITYLGKHDHA 103
                         7****************************************.***************7 PP
2WRKY107.94.8e-34219277159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+vkg+++prsYYrC+++gCpvkk+ver+++dpkvv++tYegeH+h+
  Bv9_225950_hzuo.t1 219 VNDGYRWRKYGQKMVKGNPNPRSYYRCSTTGCPVKKHVERASHDPKVVITTYEGEHDHS 277
                         58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-2839105IPR003657WRKY domain
PROSITE profilePS5081123.0241105IPR003657WRKY domain
SuperFamilySSF1182901.31E-2442105IPR003657WRKY domain
SMARTSM007741.2E-3446104IPR003657WRKY domain
PfamPF031061.0E-2347102IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-36205279IPR003657WRKY domain
SuperFamilySSF1182905.36E-30211279IPR003657WRKY domain
PROSITE profilePS5081136.001214279IPR003657WRKY domain
SMARTSM007746.4E-40219278IPR003657WRKY domain
PfamPF031067.2E-27220276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVTTEENAVI VAPKVDLQQT LSPDSTIHAS NTDREGNNSV VPEKPSEDGY NWRKYGQKNV  60
KGNEYIRSYY KCSHPNCQVK KQVERSQDGR ITDITYLGKH DHAKPHSDPQ AAVPSLLSAK  120
VQTPDCPSTA VDQDKPSDVH SPATEHVQQM EICEYAIVKA VGDNAPAPLT PSSQARDDHS  180
ENLTLKRRKK GIDGADYTTE KPNHESRIVV HTVSEVDIVN DGYRWRKYGQ KMVKGNPNPR  240
SYYRCSTTGC PVKKHVERAS HDPKVVITTY EGEHDHSMPP IRTIVPQTAA ASAGGTESND  300
MSKSKSEESD AAQSAALVCK AEKGSCVDPA TKDENNQAIV VKTEDALTGS TQHESNHKAE  360
KNDTESHVET KLEMVSQEAN QDPICTGSSS ENIDQTTKQN IDMKPEVTST EAKRPDAIVE  420
TSRAEAKTNG LERPNAEAVN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-3848280175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666094.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI373e-76WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0J8B8Q20.0A0A0J8B8Q2_BETVU; Uncharacterized protein
STRINGXP_010666094.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-81zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]