PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_225940_rhee.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 504aa    MW: 56240.4 Da    PI: 6.1431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_225940_rhee.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.92.6e-1361335022374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L++cA+av+++d+  aq+l+ +l++++s +gdp+qRl ay++e+L a+ a s+s++ykal+++e +   s+e l+++++++ev+P++k
  Bv9_225940_rhee.t1 133 KRVLVACATAVAEEDQLFAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVAKQAASGSSIYKALKSKEPA---SAELLSYMHILFEVCPYIK 220
                         578*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f+++ aN aI ea+++e+rvHiiDf+i+qG QW++Llqa+a+Rp+g+p++RiTg++++ s   +   l+ +g+rL+++A+++++pfef++ 
  Bv9_225940_rhee.t1 221 FGYMSANGAIAEAMKNERRVHIIDFQIGQGSQWVTLLQAFAARPGGAPHIRITGIDDSYSAyaRGGGLNIVGQRLSRLAKAFKIPFEFHA- 310
                         *********************************************************877788999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         v  +   ++l++L v++gEala+n++++lh+++desvs+e++rd++L+lvksl+Pkvv++veqe+++n++ Fl rfle+l+yy+a+f+s++
  Bv9_225940_rhee.t1 311 VDISGCLVQLKDLGVRRGEALAINFAFMLHHMPDESVSTENHRDRLLRLVKSLNPKVVTLVEQECNTNTAAFLPRFLETLDYYMAMFESMD 401
                         56689999*********************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++lpr +++ri+vE+++l+r++vn++acegaer+erhe l+kWr+r+++aGFkp+pls  ++ ++k+ll+++  d yr+ee++g l+lgW+
  Bv9_225940_rhee.t1 402 VTLPRVHKDRINVEQHCLARDVVNLIACEGAERVERHELLGKWRSRFTMAGFKPYPLSALVNRTIKTLLKNYC-DSYRLEERDGVLYLGWM 491
                         ************************************************************************9.66*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r Lv+ +aW+
  Bv9_225940_rhee.t1 492 NRYLVASCAWQ 502
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.436106483IPR005202Transcription factor GRAS
PfamPF035149.2E-134133502IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MPQCQPLNPQ LCYSNLSNES YPTSKNFPGQ YSTLESSTFI GSPGSLLDSS SFPPDQHCSP  60
DNANNSPLSN SCVTDDCGDL KCKLRELESA MLGPDTDVID GYCNMLETGS DVSPLEMDSW  120
GKVIEMIARK DVKRVLVACA TAVAEEDQLF AQWLMDELRQ MVSVSGDPIQ RLGAYMLEGL  180
VAKQAASGSS IYKALKSKEP ASAELLSYMH ILFEVCPYIK FGYMSANGAI AEAMKNERRV  240
HIIDFQIGQG SQWVTLLQAF AARPGGAPHI RITGIDDSYS AYARGGGLNI VGQRLSRLAK  300
AFKIPFEFHA VDISGCLVQL KDLGVRRGEA LAINFAFMLH HMPDESVSTE NHRDRLLRLV  360
KSLNPKVVTL VEQECNTNTA AFLPRFLETL DYYMAMFESM DVTLPRVHKD RINVEQHCLA  420
RDVVNLIACE GAERVERHEL LGKWRSRFTM AGFKPYPLSA LVNRTIKTLL KNYCDSYRLE  480
ERDGVLYLGW MNRYLVASCA WQCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-581365028375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666093.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0J8B9350.0A0A0J8B935_BETVU; Uncharacterized protein
STRINGXP_010666093.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]