PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_225500_xmmp.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21665.6 Da PI: 5.5235 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.1 | 1.3e-42 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq q++ l+ Bv9_225500_xmmp.t1 32 PCAACKILRRRCADKCVLAPYFPPTDPLKFSIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQTQVNDLQ 122 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Bv9_225500_xmmp.t1 123 AQLAKAQAE 131 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.209 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-42 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVMVTHDSVS PSSSSCEVPP PQSHATAVVV SPCAACKILR RRCADKCVLA PYFPPTDPLK 60 FSIAHRVFGA SNIIKFLQEL PESQRADAVS SMVYEANARL RDPVYGCAGA ICQLQTQVND 120 LQAQLAKAQA ELVNMKCQQA NLLALICMEM AHQHDETPPS NTSQSQSQSP EHPNSGLSNI 180 ACFIDDNNLE GSLWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 31 | 139 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 31 | 139 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666030.1 | 1e-146 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 6e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0J8DZV5 | 1e-145 | A0A0J8DZV5_BETVU; Uncharacterized protein | ||||
STRING | XP_010666030.1 | 1e-146 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-64 | LOB domain-containing protein 1 |