PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_222000_heoc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27414.6 Da PI: 10.4887 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.6 | 1.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA ELS+LCda +iifsstgklyey+s Bv9_222000_heoc.t1 10 RIDNTTSRQVTFSKRRTGLIKKARELSILCDAHLGLIIFSSTGKLYEYAS 59 9***********************************************86 PP | |||||||
2 | K-box | 86.4 | 5.8e-29 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ e +q+e+a+L+++++ L++++R+l+GedL+ Ls+k+Lq+Le+qL slk +R +K++++ e+i+e+++k + +++en +L++kl Bv9_222000_heoc.t1 80 TLAQDLEFWQREVARLRQQLQLLKENHRKLMGEDLSGLSIKDLQNLENQLGASLKGVRMQKDQHIAEEIKEQKRKGNLIRQENVELHHKL 169 567889**********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.431 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.60E-40 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-30 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-25 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.049 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGKMVIQR IDNTTSRQVT FSKRRTGLIK KARELSILCD AHLGLIIFSS TGKLYEYAST 60 NMGSVIERYN KTRDNNQPPT LAQDLEFWQR EVARLRQQLQ LLKENHRKLM GEDLSGLSIK 120 DLQNLENQLG ASLKGVRMQK DQHIAEEIKE QKRKGNLIRQ ENVELHHKLN LAKQENLDLK 180 TKLNGAYKVT QAYQHTNMSS NVVRSEYLIK PMYLQLSQPQ SLNIDASART MKLGLQLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 78 | 1 | 75 | MEF2C |
5f28_B | 2e-21 | 1 | 78 | 1 | 75 | MEF2C |
5f28_C | 2e-21 | 1 | 78 | 1 | 75 | MEF2C |
5f28_D | 2e-21 | 1 | 78 | 1 | 75 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010691451.1 | 1e-175 | PREDICTED: MADS-box transcription factor 23 | ||||
Swissprot | Q6EP49 | 3e-79 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A200QXU6 | 7e-95 | A0A200QXU6_9MAGN; Transcription factor | ||||
STRING | XP_010691451.1 | 1e-174 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-80 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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