PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_221600_fznw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 840aa    MW: 91890.6 Da    PI: 6.208
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_221600_fznw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4041.5e-1234708252374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++  a+++L ++se a+p g++ qR+aayf eA++arl++s+ ++  alp+ +      ++ ++a+++f+ +sP++k
  Bv9_221600_fznw.t1 470 LTLLLQCAEAVSADKFDDANKMLVEISEWATPFGTSAQRVAAYFSEAMSARLVSSCLGIHTALPSIPHY----QKLVSAFQVFNGISPFVK 556
                         579*********************************************************999999985....89999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va
  Bv9_221600_fznw.t1 557 FSHFTANQAIQEAFQREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFAEKLGLPFEFIP-VA 642
                         *********************************************************....***************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l+le+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq++++ +++Fl rf+ea++yysalfdsl a+
  Bv9_221600_fznw.t1 643 EKIGNLDLERLHVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSR-TGTFLGRFVEAIHYYSALFDSLGAS 726
                         ************************9..999999999999....********************99.899********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         ++++seer++vE++ll+rei+nv+a  g +r+ + + +++W+e+l+++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd 
  Bv9_221600_fznw.t1 727 YGEDSEERNVVEQQLLSREIRNVLAVGGPSRTGDPK-FASWKEKLQQSGFRGISLAGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWKDL 816
                         ******************************999988.****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Bv9_221600_fznw.t1 817 CLLTASAWR 825
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.052443805IPR005202Transcription factor GRAS
PfamPF035145.2E-121470825IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAASSTFFPD PNILFPYYYY HHHHPSSPPS SPYYANLSSP FSTYSTTSTT NPLMSNPPQT  60
NSLPSSSIDR TNTNTNTKMV RKRTASEMER PPSLPTNNNE ILDHRINARQ QLMLPQQHHQ  120
QPQYQQQQQE YNTGGDAATD GSDQQPLVCG FSGLPLFPPV VDRNVVVSNN RSTSISMTNF  180
SNSGSSSMVG GATSMEDPGW IDGIIKDLIQ TSNSISIPQL IQNVREIIYP CNPNLGAVIE  240
FRLRSLADPL VAQPLPPPPP HPTPTTTMSH PQFHKQQNQQ PGFSRISNTS NSIHQPGLHN  300
NNKAYYNSNL SDIDYFSPLA AAAAECNANM NWGGAAMNTP PSSLPRQQQP QQQQPLSINE  360
GGCVGGGGNS NNSNSMSMSM SNQNPPQPET SHAVEGNSDQ NPENNLDSRG SDPGVGSTTV  420
VGTEESPSTV VGTPPAPTPP PPQQVTAVAR EREREELRQR KRDEEGLHLL TLLLQCAEAV  480
SADKFDDANK MLVEISEWAT PFGTSAQRVA AYFSEAMSAR LVSSCLGIHT ALPSIPHYQK  540
LVSAFQVFNG ISPFVKFSHF TANQAIQEAF QREERVHIID LDIMQGLQWP GLFHILASRP  600
GGPPFVRLTG LGTSMEALEA TGKRLSDFAE KLGLPFEFIP VAEKIGNLDL ERLHVSKREA  660
VAVHWLQHSL YDVTGSDTNT LWLLQRLAPK VVTVVEQDLS RTGTFLGRFV EAIHYYSALF  720
DSLGASYGED SEERNVVEQQ LLSREIRNVL AVGGPSRTGD PKFASWKEKL QQSGFRGISL  780
AGNAAAQATL LLGMFPSDGY TLVEDNGTLK LGWKDLCLLT ASAWRPSHAH TMSTVCTRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04548264380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691407.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0K9RLQ20.0A0A0K9RLQ2_SPIOL; Uncharacterized protein
STRINGXP_010691407.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein