PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_220730_ohkq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 342aa    MW: 39780.6 Da    PI: 9.0123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_220730_ohkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-1827116199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+    +++++ l++p+kf++ ++g+   s   tl+ +sg +W+v++    + + +++++GW +Fv++ngL  g f+vF + g+s+f 
  Bv9_220730_ohkq.t1  27 FFKVM--LGNFEHQ-LRIPRKFIKCFKGD--LSSSCTLRGQSGHVWRVEI--VETEEDVLFSDGWGNFVRDNGLMMGYFLVFCYAGDSSF- 109
                         67777..6777765.********777877..66689**************..99999*****************************9999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v++f++
  Bv9_220730_ohkq.t1 110 -EVSIFDT 116
                         .9999987 PP
2B350.15.1e-16230310487
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++p +v     l++pk+ a eh++++  s + +l+  +  +sW+v ++++ ++++  + +GW+ Fv +n+L+e+D++vF+l+++
  Bv9_220730_ohkq.t1 230 IMLPTHVYHGFHLTVPKEWAVEHMLPE--SHEGILRVpRVEKSWKVGCRWTPSQCQ--IIRGWSTFVLDNNLEERDVCVFELVQK 310
                         678999999999***********9994..456777773566*******99999888..558********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2320119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2321119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.76124117IPR003340B3 DNA binding domain
PfamPF023622.1E-1627116IPR003340B3 DNA binding domain
CDDcd100171.56E-1727115No hitNo description
SMARTSM010196.9E-1327117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19223327IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-16226327No hitNo description
PROSITE profilePS5086311.279227329IPR003340B3 DNA binding domain
SMARTSM010192.4E-13227329IPR003340B3 DNA binding domain
PfamPF023623.2E-14229311IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-19229327IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MANVCESCKT LERYEYWNEI PSEKQKFFKV MLGNFEHQLR IPRKFIKCFK GDLSSSCTLR  60
GQSGHVWRVE IVETEEDVLF SDGWGNFVRD NGLMMGYFLV FCYAGDSSFE VSIFDTTGCE  120
VEGSHFATNM NLSSRTCRSL LHYENGQSKG KSKVDEMTES KDRKERASTQ EGFTSPMLYK  180
KRGSSQGAQS KKFYISQRRK VTEKEKQCAS NRAIKYKKHK SLRDNMIEII MLPTHVYHGF  240
HLTVPKEWAV EHMLPESHEG ILRVPRVEKS WKVGCRWTPS QCQIIRGWST FVLDNNLEER  300
DVCVFELVQK GDSCIKRNPI FHVHIFRVVR EVVPLTVSRR LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1419232815142B3 domain-containing transcription factor VRN1
4i1k_B1e-1419232815142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691310.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_019107628.10.0PREDICTED: B3 domain-containing protein Os01g0723500
TrEMBLA0A0K9QLP11e-100A0A0K9QLP1_SPIOL; Uncharacterized protein
STRINGXP_010691310.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein