PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_220620_iazt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 381aa    MW: 44178.3 Da    PI: 4.5569
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_220620_iazt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.4e-17144230286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         Wt++e+ aL++a  e+  rl+r++l++  W+ev++k+ +++++er+  qC++++  l+k+ykk++ +   r +  sss+++++++++
  Bv9_220620_iazt.t1 144 WTERETSALLDAWGERFLRLGRKNLRAEEWQEVAEKVsHQTKIERTDAQCRNRLATLKKKYKKENMRLAARrSGSSSSKWVFYRKMD 230
                         *************************************788999***********************9998846778899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-5140208IPR009057Homeodomain-like
PROSITE profilePS500906.69142201IPR017877Myb-like domain
PfamPF138371.0E-21143232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDDKENDTRY PRNSSYQQDY DSRYPRESNQ FTGGTEEDLD DETGEEEVET NGVIMIGKDT  60
FDDDEEEDDE VTDDDEEEED DGDQGDGEQF NEKEDIGNGR PQKKRKLRTL ISNYEFAPRV  120
PNPHVQKAKV TQPLSCGTLC VGDWTERETS ALLDAWGERF LRLGRKNLRA EEWQEVAEKV  180
SHQTKIERTD AQCRNRLATL KKKYKKENMR LAARRSGSSS SKWVFYRKMD TLLSSPSQQH  240
TGLSCGIDSG EYVFMNPNTY LNRANGLDEM RDSPENSESR RNEKDDSDGL PPTKGKRKRG  300
RRVDDSFQLL ANSMQKFSDM YVKIESKKRE QMVELENMRM EFHKQIETER RQILERAQAE  360
IVKIRQGDDD ENDLSAENLS G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691286.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A0K9RAI11e-124A0A0K9RAI1_SPIOL; Uncharacterized protein
STRINGXP_010691286.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-62Trihelix family protein