PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_218360_cefe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 268aa    MW: 32234 Da    PI: 10.0078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_218360_cefe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-1525115198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffk+    + l+++rl +p kfa++++++   s+ +tl+ ++g sW+++l  +++ +   ++ kGW  F ++ ++k g f+ F+++g++ f
  Bv9_218360_cefe.t1  25 FFKII--LHCLQEDRLKIPEKFAKKFSSQ--LSTVVTLTIPTGLSWKIRL--SRCTEDkLYFDKGWPIFMEQTNIKHGYFLEFEYEGNNHF 109
                         67777..89999**************877..8999***************..66655559***************************9999 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                            v++f+
  Bv9_218360_cefe.t1 110 --EVHIFS 115
                         ..888876 PP
2B336.77.6e-121862671598
                         -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l +pk+f++eh +gk  + k   l+  +g++W+v++ y  + +  +++ GWk+F ++n+  eg++ +F l+++++ + ++kvf+
  Bv9_218360_cefe.t1 186 YLHMPKSFTNEHmKGK--SYKFANLQLGEGKKWRVTC-YFHSESFRLIGPGWKKFRQENNWSEGESYTFVLVDKKRNSVTFKVFK 267
                         4789********5444..44578899999********.44444446899**********************99899999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2019119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-2120119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.64823117IPR003340B3 DNA binding domain
CDDcd100172.15E-1323115No hitNo description
SMARTSM010192.1E-1225117IPR003340B3 DNA binding domain
PfamPF023623.4E-1325115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-14169262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-14171261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152172268IPR003340B3 DNA binding domain
CDDcd100176.25E-7173265No hitNo description
SMARTSM010191.7E-5175267IPR003340B3 DNA binding domain
PfamPF023623.6E-10187267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVRVKKRRRE KPPNLLSFSG KPFRFFKIIL HCLQEDRLKI PEKFAKKFSS QLSTVVTLTI  60
PTGLSWKIRL SRCTEDKLYF DKGWPIFMEQ TNIKHGYFLE FEYEGNNHFE VHIFSLSCCE  120
IDYPIHQYDD HQRRKQNRND DFKVKEEQEN EEDEEKNDIH RATTMSKNKC KKPSFTITTR  180
KYCVSYLHMP KSFTNEHMKG KSYKFANLQL GEGKKWRVTC YFHSESFRLI GPGWKKFRQE  240
NNWSEGESYT FVLVDKKRNS VTFKVFKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411KKRRREKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690981.10.0PREDICTED: B3 domain-containing protein At1g49475
STRINGXP_010690981.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein