PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_218340_sazm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 318aa    MW: 37707 Da    PI: 4.3426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_218340_sazm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.8e-141741794
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                        ++p  f +++ g+   +  ++l+++ g+ W vk+   +  ++ ++++GW++Fv +n Lk g+f+vF+++g++ f  ++
  Bv9_218340_sazm.t1  1 MIPSAFEDKITGN--IPNRVILKNSLGKIWLVKV--GNIEDHLYFQGGWSKFVLENFLKFGEFLVFTYIGQRIFDVMI 74
                        5899998888666..4557***************..*********************************988774444 PP
2B343.75e-14212293185
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         ff + ++ +  +++rl++p++  ++++ k   s  + l+d++g++W  k +++ ++ ++ +++GWk+ +++n++ke D++++++ 
  Bv9_218340_sazm.t1 212 FFITRLKRSEYERNRLMIPRDVSAKINVK--YSEIIDLQDPKGEKWVAKRSIWESG-QVCIQGGWKKLCDSNKVKEDDTIILEFL 293
                         556666788888999*******9999655..5568***************999997.6789*********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.888178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-17180IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-10175No hitNo description
Gene3DG3DSA:2.40.330.101.5E-15280IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-11274IPR003340B3 DNA binding domain
SMARTSM010190.052678IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.107.1E-491174No hitNo description
SuperFamilySSF1019362.16E-17207296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-16207311IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-10211296No hitNo description
PROSITE profilePS5086311.857212313IPR003340B3 DNA binding domain
SMARTSM010191.3E-11212313IPR003340B3 DNA binding domain
PfamPF023625.9E-12212293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MIPSAFEDKI TGNIPNRVIL KNSLGKIWLV KVGNIEDHLY FQGGWSKFVL ENFLKFGEFL  60
VFTYIGQRIF DVMILGRDGC ERTLVHEEEE EIEVNEEEQV EDECEYENEE EDEDEDEDED  120
EDEDEDEDED EDEDEEEEDE EMGNKKLRKF LPKKKTPKYN AHNDKDEHED EDYMPKRKFT  180
NVLKKRNEYK YAAREDKEST GILKYLPKKN PFFITRLKRS EYERNRLMIP RDVSAKINVK  240
YSEIIDLQDP KGEKWVAKRS IWESGQVCIQ GGWKKLCDSN KVKEDDTIIL EFLPRTKQSC  300
ETINIKVQII NSDSVRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107213.10.0PREDICTED: B3 domain-containing protein At4g34400-like
STRINGXP_010691759.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-14B3 family protein