PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_218180_mcmt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 421aa MW: 47270.6 Da PI: 6.5911

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_218180_mcmt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.2	3.4e-21	46	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt +e+ aLi+a+re++ +lrrg+l++++W++v++ + + + ++++qC++k+e+l+kry+ + +++k+ + + ss+++yf +++ Bv9_218180_mcmt.t1 46 CWTPDETSALIDAYREKWYSLRRGNLRAAHWQDVADDVhrrcPHVVLPKTAVQCRHKMEKLRKRYRTELQRAKSIpHHRFSSSWVYFYKMD 136 8*********************************9966556667899*********************988999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.5E-22	45	138	No hit	No description
SMART	SM00595	1.7E-9	54	143	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MTSSSPPPHL SSDFMDPPLG VPLLLPPPPP PPPPQPPSSR RLPPPCWTPD ETSALIDAYR 60 EKWYSLRRGN LRAAHWQDVA DDVHRRCPHV VLPKTAVQCR HKMEKLRKRY RTELQRAKSI 120 PHHRFSSSWV YFYKMDSMEK GDDAASSSLI LADVNNNNDN NSVSTVVVAA NHHNDAVNHG 180 FDDVDDDVDG DGDDGGDCDD VDDEDYSVGG SFKRNGLRIR IAGNSRKSYA GFDENPNPNP 240 NSNSNYNPNC NIKFRRQMML RCNNEFATPP KYEEGGRYRN GVLRNGSNGG GGSTSGMGLG 300 MGMSVMAKKK RSVLGKRERE MQRDGEKERD GERSGGDKAT MAMVEAIRVL GEGFVRVEKM 360 KMEMMRETER VRMENEMRRT EMILQSQQHI VEAFAKGWAD LVVNNDDDDN DDKNNNKDAS 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MTSSSPPPHL SSDFMDPPLG VPLLLPPPPP PPPPQPPSSR RLPPPCWTPD ETSALIDAYR  60
EKWYSLRRGN LRAAHWQDVA DDVHRRCPHV VLPKTAVQCR HKMEKLRKRY RTELQRAKSI  120
PHHRFSSSWV YFYKMDSMEK GDDAASSSLI LADVNNNNDN NSVSTVVVAA NHHNDAVNHG  180
FDDVDDDVDG DGDDGGDCDD VDDEDYSVGG SFKRNGLRIR IAGNSRKSYA GFDENPNPNP  240
NSNSNYNPNC NIKFRRQMML RCNNEFATPP KYEEGGRYRN GVLRNGSNGG GGSTSGMGLG  300
MGMSVMAKKK RSVLGKRERE MQRDGEKERD GERSGGDKAT MAMVEAIRVL GEGFVRVEKM  360
KMEMMRETER VRMENEMRRT EMILQSQQHI VEAFAKGWAD LVVNNDDDDN DDKNNNKDAS  420
S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690969.1	0.0	PREDICTED: uncharacterized protein LOC104904423
TrEMBL	A0A0K9S3N9	1e-113	A0A0K9S3N9_SPIOL; Uncharacterized protein
STRING	XP_010690969.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-42	Trihelix family protein