PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_217430_npys.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9268.3 Da PI: 8.4846 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 14 | 61 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 WT+ + + +a + + + +W+ Iar +g g+t++++k ++ ++l Bv9_217430_npys.t1 14 TWTPKQNKAFERALAIYDRDtpdRWHNIARAVG-GKTAEEVKRHYEDLL 61 6*****************99*************.***********8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.003 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-9 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-13 | 14 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.98E-9 | 14 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 14 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASGSMSSRG TGCTWTPKQN KAFERALAIY DRDTPDRWHN IARAVGGKTA EEVKRHYEDL 60 LEDIKNIESG QVPFPNYRNI GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-36 | 7 | 81 | 3 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690880.1 | 4e-57 | PREDICTED: protein RADIALIS-like 2 | ||||
Refseq | XP_019107549.1 | 4e-57 | PREDICTED: protein RADIALIS-like 2 | ||||
Swissprot | Q58FS3 | 2e-36 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0K9RRG7 | 5e-51 | A0A0K9RRG7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690880.1 | 1e-56 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 7e-37 | RAD-like 6 |
Publications ? help Back to Top | |||
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