PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_217320_ofhh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11951.3 Da PI: 9.7539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.4e-09 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a +++ ++ +W +ar + g++++++k ++ Bv9_217320_ofhh.t1 15 SWTAKQNKQFERALALYDKDtkdRWQNVARLVE-GKSAEEVKRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.621 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-6 | 15 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-12 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-5 | 16 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MASNSYSSSR NVSSSWTAKQ NKQFERALAL YDKDTKDRWQ NVARLVEGKS AEEVKRHYEI 60 LLEDLHQIEA GRVPFPNYRQ NAANSMNFNE EQRQLRYLRL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-35 | 7 | 101 | 2 | 93 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690864.1 | 1e-69 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0K9QN26 | 4e-46 | A0A0K9QN26_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010690864.1 | 5e-69 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-35 | RAD-like 1 |