PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_216790_nkua.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | DBB | ||||||||
Protein Properties | Length: 208aa MW: 23231.8 Da PI: 6.1579 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.9 | 8.6e-08 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e++e++ fC ++ lCe C + H+ Bv9_216790_nkua.t2 4 QCDVCEKQEASVFCAADEAALCEGCDYKVHH 34 7**************************9974 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e++ C+ ++e ++ lfC++++ lC++C +Hk Ht Bv9_216790_nkua.t2 54 EAPLCDICQERRAFLFCREDRAILCRECDIPIHKAneHT 92 6799*****************************877865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.523 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.55E-4 | 3 | 33 | No hit | No description |
SMART | SM00336 | 9.2E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.4E-6 | 4 | 34 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.13E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKIQCDVCEK QEASVFCAAD EAALCEGCDY KVHHANKLAS KHLRFSLLHP SFKEAPLCDI 60 CQERRAFLFC REDRAILCRE CDIPIHKANE HTQNHNRFLL TGVKISASSA TYPTSSPRSS 120 TSSGPKSSVS ISSYDHDIFN QYSYSTTPSS TATTTTTTTT TTMNYDHCNE DGSISMNNTI 180 SEYLMETLPG WRLEDLLDSS SASHNLYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690797.1 | 1e-152 | PREDICTED: B-box zinc finger protein 20 | ||||
Swissprot | Q0IGM7 | 4e-71 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A0K9QAT5 | 1e-107 | A0A0K9QAT5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690797.1 | 1e-151 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 4e-63 | DBB family protein |
Publications ? help Back to Top | |||
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