PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_216790_nkua.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family DBB
Protein Properties Length: 261aa    MW: 29046.3 Da    PI: 6.1712
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_216790_nkua.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-07434535
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                         C+ +e++e++ fC  ++  lCe C  + H+
  Bv9_216790_nkua.t1  4 QCDVCEKQEASVFCAADEAALCEGCDYKVHH 34
                        7**************************9974 PP
2zf-B_box26.41.4e-085492238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        e++ C+ ++e ++ lfC++++  lC++C   +Hk   Ht
  Bv9_216790_nkua.t1 54 EAPLCDICQERRAFLFCREDRAILCRECDIPIHKAneHT 92
                        6799*****************************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.523147IPR000315B-box-type zinc finger
CDDcd000213.97E-4333No hitNo description
PfamPF006431.3E-5434IPR000315B-box-type zinc finger
SMARTSM003369.2E-6447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.46653100IPR000315B-box-type zinc finger
SMARTSM003361.2E-1553100IPR000315B-box-type zinc finger
PfamPF006432.1E-75492IPR000315B-box-type zinc finger
CDDcd000213.04E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKIQCDVCEK QEASVFCAAD EAALCEGCDY KVHHANKLAS KHLRFSLLHP SFKEAPLCDI  60
CQERRAFLFC REDRAILCRE CDIPIHKANE HTQNHNRFLL TGVKISASSA TYPTSSPRSS  120
TSSGPKSSVS ISSYDHDIFN QYSYSTTPSS TATTTTTTTT TTMNYDHCNE DGSISMNNTI  180
SEYLMETLPG WRLEDLLDSS SASHNLCKIS DYTNTNPINR NQQVEENIGG FGSENQSMMS  240
VFHHLGPLVP SHLPANFLDR S
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690797.10.0PREDICTED: B-box zinc finger protein 20
SwissprotQ0IGM73e-70BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0K9QAT51e-104A0A0K9QAT5_SPIOL; Uncharacterized protein
STRINGXP_010690797.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-62DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]