PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_216430_rwmw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family DBB
Protein Properties Length: 195aa    MW: 21583.3 Da    PI: 6.0143
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_216430_rwmw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e   +++fC  ++  lC+ C ++ H
  Bv9_216430_rwmw.t1  4 LCDVCEGAAAIFFCAADEAALCRACDEKVH 33
                        7******99******************998 PP
2zf-B_box27.66.1e-095392338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                         +kC+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Bv9_216430_rwmw.t1 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHR 92
                        689*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.954147IPR000315B-box-type zinc finger
CDDcd000212.92E-6333No hitNo description
PfamPF006432.9E-6334IPR000315B-box-type zinc finger
SuperFamilySSF578459.16E-54989No hitNo description
SMARTSM003361.2E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006434.6E-75392IPR000315B-box-type zinc finger
CDDcd000211.44E-85493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRTLCDVCEG AAAIFFCAAD EAALCRACDE KVHMCNKLAS RHIRVGLAAP NAVPKCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HRRYLLLRQR AEFPGDKYGN AEDMNSQQAD  120
RTEGRREKEQ NHVIFVDGNT VPDAQMDTNM IDLNARPQRT ANQSPNNQGM DDVSRANGDS  180
ASIVPVRSFK SEPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690759.11e-145PREDICTED: B-box zinc finger protein 19 isoform X2
SwissprotC0SVM51e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9QIE51e-105A0A0K9QIE5_SPIOL; Uncharacterized protein
STRINGXP_010690759.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-71DBB family protein